Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3419 84.2 2e-11 >seq3419 Length=773737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || || || ||||| ||||| ||| |||||||||||| ||||||||||| Sbjct 377558 ACCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGC 377617 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || || | || ||||| |||||||||| | |||||||| | Sbjct 377618 AAGAGTG-CGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTG 377676 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATT 34075 | | | || |||||| | | | ||||||| || | | || | |||| | || Sbjct 377677 GAATACCTTCCTTGTCC-TGAATCTTTGCTT--TGACATTGTCAATTGTGTCAGAACTTT 377733 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || || ||||| ||||| || |||||||| || || ||||| Sbjct 377734 CAACTTCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCAT 377785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396976436486728