Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3447 159 8e-34 seq3318 152 1e-31 seq3419 141 2e-28 seq17702 138 3e-27 seq2991 120 7e-22 >seq3447 Length=1078458 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| | ||| || || || | ||| ||| || ||||| |||||||| ||| Sbjct 808029 CCTCCCCTGAGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCG 808088 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | |||||| |||||||| ||||| ||||| || |||| Sbjct 808089 AGCGTGCGGCCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGG 808148 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||||||||| |||| ||||| || || || | ||| || || || Sbjct 808149 ATTCCCTCCTTATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACC 808208 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || || ||||||||||| || || || ||||||||||||||| || Sbjct 808209 TCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCATTTTG 808259 >seq3318 Length=237370 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || ||| |||||||| || || ||||| Sbjct 45699 CCACCACGGAGGCGGAGAACAAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGCT 45640 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||||| ||||||||||||||||| || |||| Sbjct 45639 AGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 45580 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || || || ||||| || || | ||||| || || Sbjct 45579 ATCCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACC 45520 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 45519 TCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 45473 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | || || || || || |||||||||||| Sbjct 46155 CCACCACGAAGACGGAGAACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCG 46096 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||| || | || ||||| ||||||||||| | ||| || |||||| Sbjct 46095 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGG---TCTGGG 46039 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || ||||| || || | ||||| ||| Sbjct 46038 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTGTCGCTGCTCTCT 45979 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 45978 ACCTCGAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | || || || || || |||||||||||| Sbjct 46383 CCACCACGAAGACGGAGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCG 46324 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||| || | || ||||| ||||||||||| | ||| || |||||| Sbjct 46323 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGG---TCTGGG 46267 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || ||||| || || | ||||| ||| Sbjct 46266 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCT 46207 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 46206 ACCTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || || || ||||| |||||||| || Sbjct 46611 CCACCACGAAGACGAAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCC 46552 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||||| || | || ||||| |||||||||| | ||| || |||||| Sbjct 46551 AATGTCCTGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGG---TCTGGG 46495 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || ||||| || || | ||||| ||| Sbjct 46494 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCT 46435 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| || || ||||||||||| |||||||| Sbjct 46434 ACCTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46385 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||| || || | || | || ||||| | || || || |||||| Sbjct 46803 TCCTTCTGGATGTTATAATCAGCCAAAGTCCTGCCATCTTCCAGCTGCTTCCCAGCGAAG 46744 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || |||||| ||||| ||||||||||| || || ||||| || Sbjct 46743 ATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACATTG 46684 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||||||||||||||| || ||||||||| Sbjct 46683 TCAATGGTGTCACTGCTCTCAACCTCAAGGGTGATCGTCTTCCCGGTAAGGGTCTTGACG 46624 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 46623 AAGATCTGCAT 46613 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || || | || | ||||| || | || ||||| ||||| Sbjct 45892 TTCCTTCTGGATGTTGTAATCCGCCAAGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 45833 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| || || || ||||||||||| || || || || Sbjct 45832 GATCAGCCTCTGCTGG---TCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAAC 45776 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||||| || || || || ||||||||||| || || || ||||| Sbjct 45775 GTTGTCAATTGTGTCGCTGCCCTCAACCTCAAGGGTGATCGTCTTACCCGTTAGGGTCTT 45716 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 45715 GACGAAGATCTGCAT 45701 >seq3419 Length=773737 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||||||||| | || | ||| ||| |||||||| || ||||| || Sbjct 377104 CCTCCCCGAAGTCTAAGTACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 377163 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||||||||| ||||| || | ||| ||| |||| Sbjct 377164 AGGGTACGACCATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGG 377223 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| ||||| ||||| || ||||| || || || || | ||| ||| || Sbjct 377224 ATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTGTCAATTGTATCAGAACTC---TCG 377280 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || |||||||| ||||||||||| || ||||||||||| Sbjct 377281 ACCTCCAAGGTTATAGTCTTCCCTGTCAGAGTCTTAACAAATATCTGCAT 377330 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || ||||| | ||| || || ||||| || || || || Sbjct 376648 CCACCACGAAGTCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 376707 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | || || ||||| ||||||| | ||| ||| | || Sbjct 376708 AGGGTACGTCCATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCAGGAGGA 376767 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || ||||| || ||||| || ||||| || || || || | ||| ||| || Sbjct 376768 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAACTC---TCA 376824 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || || || || ||||| ||||| || |||||||||||| Sbjct 376825 ACCTCGAGAGTAATGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCATT 376875 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||||||||| || || || | ||| || || | || || || || || Sbjct 381334 TTCCTTTTGGATATTATAGTCTGCAAGGGTTCTTCCATCCTCAAGCTGCTTACCAGCAAA 381393 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||||| |||||| || || || ||||||||||| || || || || Sbjct 381394 TATGAGCCTTTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGGATTTTTGCCTTGACATT 381453 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || |||| ||| ||| || ||||| | ||||| || ||||| || |||||||| Sbjct 381454 GTCAATAGTATCAGAACTC---TCAACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTCTT 381510 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 381511 AACGAAAATTTGCAT 381525 >seq17702 Length=19512 Score = 138 bits (152), Expect = 3e-27 Identities = 173/234 (74%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | | || ||| || ||||| | ||| ||| || || ||||| |||| Sbjct 10327 CATG-CCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGT 10269 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||||||||| || | || || || |||||||||||||||||||| | Sbjct 10268 CAGCAAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAG 10209 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| ||||| ||||| || ||||||||||| || |||| | || | | Sbjct 10208 GAGGTATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAG--TGTCTGAACT 10151 Query 288422 CT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| ||||| ||||| || ||||| || ||||| Sbjct 10150 CTCGACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| |||| ||| |||||| ||||| ||||| || || Sbjct 11235 CCTCCGCGAAGGCGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCC 11176 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || || ||||| ||||||| ||| ||||| |||| Sbjct 11175 AGGGTCCTGCCATCCTCCAGCTGCTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGG 11116 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| ||||| ||||| || || || | ||| |||| ||| Sbjct 11115 ATCCCTTCCTTATCCTGGATCTTCGCCTTCACATTGTCAATGGTATCAGAGCTC---TCT 11059 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||| || || |||||||| Sbjct 11058 ACCTCCAGAGTGATGGTCTTTCCAGTTAGGGTCTTCACAAAAATCTGCAT 11009 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || |||||||| || | ||||| || || || | ||||| || || || Sbjct 10971 TCTTTCTGTATGTTATAGTCAGCTAAGGTGCGACCATCCTCAAGCTGTTTCCCGGCAAAA 10912 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||||||| | ||||| ||||| |||||||||||||||| || || || Sbjct 10911 ATGAGCCTCTGTTGATCAGGAGGGATGCCTTCCTTATCCTGGATTTTCGTCTTTACATTG 10852 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| | || ||| || || || || ||||| ||||| || || || |||||| Sbjct 10851 TCTATTGTGTCAGAACTC---TCAACCTCCAGAGTGATGGTCTTACCAGTGAGGGTCTTG 10795 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 10794 ACAAAGATCTGCAT 10781 >seq2991 Length=32481 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| |||||||| | || || || ||||||||||| |||||||| || || || || Sbjct 26329 AAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCGAGGGTACGACCATC 26270 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 || | || || || |||||||| |||||||| || || ||| || || || || Sbjct 26269 CTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGG---TCCGGGGGAATGCCCTCCTT 26213 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 |||||||| || || ||||| || || || | ||| || ||||| || || || || Sbjct 26212 GTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTACCTCTAGGGTTAT 26153 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||| ||||||||||| |||||||| Sbjct 26152 GGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179385909183992