Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3345 113 1e-19 >seq3345 Length=549657 Score = 113 bits (124), Expect = 1e-19 Identities = 568/879 (65%), Gaps = 42/879 (5%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| | || || |||||||| || || ||||| ||||| |||||||| | ||| Sbjct 164406 TCTGCATGTTTCCGATTCAGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAGGCGT 164347 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAG-ACGTCGTCGACTGGCGCGAGA 242983 | || ||||| ||||||| ||| ||||| | ||| | || ||||||| |||| Sbjct 164346 CGTTCTGGACGGCCGAGGAGGTTGACCTCT---CCCAGGATATCCGCGACTGG---GAGA 164293 Query 242984 A-AC--TCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCT 243040 | || | || ||||||||||| || ||||||| ||| | || | |||||||| | || Sbjct 164292 ATACCTTAAACGACGACGAACGCCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCT 164233 Query 243041 CCGATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCA 243099 ||||||| ||||| | || ||||| | | ||| ||| || || ||| | Sbjct 164232 CCGATGGAATTGTACTTGAGAATCT-CGCTTCTCGTTTCATGTCTGATGTTCAGGTGGCT 164174 Query 243100 GAGGCACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAACAA 243156 ||||| || || |||| | ||||| || || | ||| |||||| || || Sbjct 164173 GAGGCTCGTGCCTTCTATGGGTTCCAAATCGCAATCGA-GAA--TATCCACTCCGAGATG 164117 Query 243157 TATGCTCTTCTTATCGACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGC----TTT 243211 || ||| ||| |||| |||| | | | || |||||| || || | || Sbjct 164116 TACAGTCTACTTCTCGA--GACTTACAT--TAAGGACTCGAGCGAGAAGGATCATCTCTT 164061 Query 243212 TCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGC 243271 ||| |||| | || | ||| || || || ||||| | ||||||| ||| Sbjct 164060 TCG-CGCCGTTGAGACCATCCCTTGCGTGGCCAAGAAGGCCGATTGGGCTCTACGCTGGA 164002 Query 243272 TAGA--ACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTAT 243329 | || | ||| | | ||||| ||||||||||| |||| | || || ||||| || Sbjct 164001 TCGACGGCTCGG--AGACCTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAAT 163944 Query 243330 TCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGG 243389 | || || || |||||||| || || |||||| || ||| |||||||||| Sbjct 163943 CTTCTTCTCGGGTTCCTTCTGCGCGATTTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGG 163884 Query 243390 CCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTG 243448 ||| | || |||||| |||| || ||||| || ||||| | |||| ||| Sbjct 163883 TCTCACCTTCTCCAACGAGCTCATTTCACGAGACGAAGGGCTTCATTGCGACTTCGCGTG 163824 Query 243449 AGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA-AACG-GTCAAACAAATCAT 243506 || |||| | | ||| | ||| | | | | || || || | Sbjct 163823 -TCTGCTGTACGGATTATTGAGGAATAGGCT--GAGTGAAGAGCGTGTGCGGGGGATTGT 163767 Query 243507 CACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTAT 243566 | || || || || | ||| | |||||| |||||||||| | || ||| | | | Sbjct 163766 GAGGGATGCCGTGGATATCGAGAGGGAATTTGTTTGCGACGCGCTCCCTTGCGCGTTGGT 163707 Query 243567 TGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCAT 243626 ||||||||| || |||||| | ||||||||||| |||||||| || || | | Sbjct 163706 CGGCATGAACGGGGATCTCATGAGTCAGTACATCGAGTTCGTAGCAGATCGGCTGCTGGG 163647 Query 243627 CGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCAT 243686 || || || ||| || |||| ||| || || |||| | |||||||| || Sbjct 163646 TGCTCTGGGACATGGTAAGATGTATAACGTGGCTAATCCATTTGATTGGATGGAGCTGAT 163587 Query 243687 TTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 |||| | || || || || ||||| ||||| ||||| || Sbjct 163586 TTCGTTACAGGGTAAGACCAACTTTTTCGAGAAGCGAGT 163548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102628983133400