Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq4995 843 0.0 >seq4995 Length=1147 Score = 843 bits (934), Expect = 0.0 Identities = 494/512 (96%), Gaps = 0/512 (0%) Strand=Plus/Minus Query 4828 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 4887 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 512 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 453 Query 4888 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 4947 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 393 Query 4948 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCACAACAATGAGTGGCAGATAT 5007 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 392 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 333 Query 5008 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCAATTTC 5067 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 332 AGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTC 273 Query 5068 TGATGCTGAATCAATGAGGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACG 5127 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 272 TGATGCTGAATCAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACG 213 Query 5128 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 5187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 CTTGAGGGTGAATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTT 153 Query 5188 CATGTTCACCGTTCCTTAAAGACGCTGTTTAACATGCCGATCGCCAGACTTAAATGAGTC 5247 |||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||| Sbjct 152 CATGTTCATCGTTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTC 93 Query 5248 GGTGTGAATCCCATTAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 5307 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GGTGTGAATCCCATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATG 33 Query 5308 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 5339 |||||||||||||||||||||||||||||||| Sbjct 32 TCATCGACGTTTTTATCCGGAAACTGCTGTCT 1 Score = 269 bits (298), Expect = 1e-67 Identities = 231/283 (82%), Gaps = 17/283 (6%) Strand=Plus/Minus Query 61853 TTGCTTTCTCTGCCTTTTCACGCAGTGCCTGATAATTAATTTCGCTCACTTCGAACCTCT 61912 |||| | ||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 512 TTGCCTGCTCTGCCGCTTCACGCAGTGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCT 453 Query 61913 CTGTTTACTGATAAGCTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 61972 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAAC 393 Query 61973 GGCCAGGCGTCTTCGCTCATCTATGGGATCGCCACACTCGCAACAATGAGTAGCAGATGG 62032 | ||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||| Sbjct 392 GACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATAT 333 Query 62033 GGCAT-----TACTATCGG---ATTTGTATTTTTGCAGGGAGAGATTGCGCTGCAATTCT 62084 || | | | ||| |||| || |||| | | |||||||| |||||| Sbjct 332 AGCCTGGTGGTTCAGGCGGCGCATTT---TTATTGCTGTG-----TTGCGCTGTAATTCT 281 Query 62085 TCGATTTCAGCGGCGTTGTCGATGATATCTGCCAT-TTTCCTT 62126 || ||||| | || || ||||| |||||||| |||| || Sbjct 280 TCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 238 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4520 TGCTGCTTCAAGCTCAACACGCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 4579 ||||| |||||||||||||||||| ||||| || || |||||||| |||||||||||||| Sbjct 688 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 629 Query 4580 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 4636 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 628 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 572 Score = 158 bits (174), Expect = 5e-34 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61545 TGCTGCTCCCAGCTCAACTCTCAGCTTCCCAACCGTAAGCGCAATCTCCTCGTTCTCCTG 61604 ||||| | | |||||||| | ||| ||||| || || |||||||| |||||||||||||| Sbjct 688 TGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTG 629 Query 61605 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCTGTTCATCCAGCAGTGCCAGCAC 61661 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 628 GTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCAC 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202695307216624