Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3318 100 3e-16 seq2991 100 3e-16 seq3419 95.1 1e-14 seq17702 91.5 2e-13 >seq3318 Length=237370 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || |||||||| || || || || |||| || ||||| || || ||||| Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | ||| | | || |||||| || | || | | | ||| Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCC-TGGATCTTAGCCTTAACGTT 45545 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||||| ||||| || | |||||||| ||||| || || ||||| || Sbjct 45544 GTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGAC 45485 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 45484 GAAGATCTGCAT 45473 >seq2991 Length=32481 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| || || | || | ||||| ||| |||||| || ||||| ||||| || Sbjct 26343 CCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCG 26284 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||||||||| ||||| ||||| ||||||||||| | || Sbjct 26283 AGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 26224 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || || | | | | || || || || || Sbjct 26223 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTACC 26164 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || ||||| || ||||| | ||||| || ||||| ||||| || Sbjct 26163 TCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATCTT 26114 >seq3419 Length=773737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| ||||||||||| || | || || ||||| || ||||| || Sbjct 377822 CTCCTTTTGGATGTTGTAGTCAGCCAGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAA 377881 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | || ||||||||| | || | | |||||| ||| ||| | || | |||| Sbjct 377882 AATCAATCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCC-TGAATCTTAGCCTTGACAT 377940 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || |||| |||| ||| ||||| || || || | Sbjct 377941 TATCAATAGTGTCAGAGCTC---TCAACCTCGAGGGTGACGGTCTTGCCAGTAAGTGTTT 377997 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 377998 TCACAAAGATTTGCAT 378013 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| |||||||| ||||| || || || || || | | Sbjct 381310 ACGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCTGCAAGGGTTCTTCC 381369 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||||||||| |||||||| | || ||||| | ||| | | |||||| Sbjct 381370 ATCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGGGATACCCTCCTT 381429 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 |||| ||||||| |||| | | | || || ||| || || || | || Sbjct 381430 GTCCTGGATTTTTGCCTTGACATTGTCAATAGTATCAGAACTC---TCAACTTCCAAAGT 381486 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || || || ||||| || || |||||||| Sbjct 381487 GATGGTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| || |||| |||| | | || ||||||||||| ||||| || Sbjct 381107 TCCTTTTGAATGTTGTAGTCTGCCAAGGTCCTCCCATCCTCTAGCTGCTTCCCAGCAAAG 381166 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | ||||||||||| ||| | | ||||||||| ||||||| || | | Sbjct 381167 ATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTTGCCTTTACGTTA 381226 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| |||||| || | ||||| || || || || | ||||| ||| Sbjct 381227 TCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTAACA 381286 Query 42198 AAGATTTGCAT 42208 || || ||||| Sbjct 381287 AAAATCTGCAT 381297 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || || | ||||||||| | || |||||| ||||| ||||||||||| | |||| | Sbjct 376885 AATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAAGGTCCTC 376944 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || | |||||||||||| || || || | ||| ||||| | ||| | | ||| Sbjct 376945 CCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCC 377004 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCACATCGACCG 42168 ||||| |||||| |||| | | | || | || || | ||| || || | | Sbjct 377005 TTGTCTTGGATTTTAGTCTTGA-CATTGTCAATG-GTATCTGAACTTTCAACTTCCAAGG 377062 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || || ||||| ||||| || ||||| Sbjct 377063 TGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 9/214 (4%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| ||||| ||||| ||||| || |||| | || || Sbjct 377349 CACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAG-GTCCTGCCATCTTC 377407 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||| || || || ||||| | | |||||| || | || | | |||||||||| | Sbjct 377408 TAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGGATTCCCTCCTTGTCC-T 377466 Query 42119 GATTTTTTGTTTGAGCGTCGCCACC-GTGTCG---CTCGATTCCACATCGACCGTGATGG 42174 || | || | || | | | || ||||| ||| ||||| || | ||||||| Sbjct 377467 GAATCTTGGCTTTAACATTATCAATTGTGTCAGAACTC---TCCACTTCCAGTGTGATGG 377523 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || || |||||||||||||| Sbjct 377524 TTTTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | |||| || | ||| |||||| |||||||||||||| || Sbjct 377558 ACCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGC 377617 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || ||||| || ||||| ||||| | | ||||| || | ||| Sbjct 377618 AAGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGG 377677 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| ||| | |||| ||||| | | | ||||| ||| | Sbjct 377678 AATACCTTCCTTGTCC-TGAATCTTTGCTTTGACATTGTCAATTGTGTCAGAACTTTCAA 377736 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| ||||| || || || || || || || || ||||| Sbjct 377737 CTTCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCAT 377785 >seq17702 Length=19512 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||||||||| || || || | || || |||||||| || ||||| Sbjct 10516 CTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAA 10457 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | ||||||||| | || | || || |||||| ||| | || | |||| Sbjct 10456 GATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC-TGAATCTTCGCCTTGACGT 10398 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | || ||||| |||| || || || | |||||||| ||||| || || || | Sbjct 10397 TATCAACGGTGTCAGAGCTC---TCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTT 10341 Query 42193 TTACAAAGATTTGCAT 42208 |||||||||| ||||| Sbjct 10340 TTACAAAGATCTGCAT 10325 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||||||||| || || || | || || |||||||| || ||||| Sbjct 10744 CTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 10685 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||| || | ||||||||| | || | || || |||||| ||| | || | |||| Sbjct 10684 TATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC-TGAATCTTCGCCTTGACGT 10626 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | |||||||| ||||| || || |||| Sbjct 10625 TATCAATGGTGTCAGAGCTC---TCAACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCT 10569 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 10568 TGACAAAGATCTGCAT 10553 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || || || | |||| ||| | ||| ||||| ||||||||||| ||||| Sbjct 10323 CCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 10264 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| || || ||||| ||||| | || Sbjct 10263 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGT 10204 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||| || ||| ||| ||| | ||| | | | ||||| ||| || Sbjct 10203 ATCCCTTCCTTATCTTGGATCTTTGCTTTCA-CGTTGTCAATAGTGTCTGAACTC---TC 10148 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| ||||| || || || || || ||||||||||| Sbjct 10147 GACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543092179597760