Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3345 111 2e-19 seq3318 100 3e-16 seq17702 89.7 5e-13 seq3419 89.7 5e-13 >seq3345 Length=549657 Score = 111 bits (122), Expect = 2e-19 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 ||| || |||| |||||| | ||| ||| || | |||||| || || | || | || Sbjct 163763 GGATGCCGTGGATATCGAGAGGGAATTTGTTTGCGACGCGCTCCCTTGCGCGTTGGTCGG 163704 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG-TGC 52731 |||||||| | | |||| | ||||||||||||| || || ||||| ||| ||| ||| Sbjct 163703 CATGAACGGGGATCTCATGAGTCAGTACATCGAGTTCGTAGCAGATCGGCTGCTGGGTGC 163644 Query 52732 AGCTCGGGCAGCCAAAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATT 52790 || || || ||| | |||| | || ||||| ||||| | ||| | ||| Sbjct 163643 T-CTGGGACATGGTAAGATGTATAACG-TGGCTAATCCATTTGATTGGATGGAGCTGATT 163586 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | |||| |||||||||||||||||||||||||| |||||||| Sbjct 163585 TCGTTACAGGGTAAGACCAACTTTTTCGAGAAGCGAGTAGGCGAGTA 163539 >seq3318 Length=237370 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||| ||| | ||||| ||| ||||| ||||| |||| Sbjct 45666 GATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCG 45607 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| |||||||| || || ||||||||||| || | || | |||| Sbjct 45606 AAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTC-CTGGATCTTAGCCTTAAC 45548 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| | ||||||||| | || | || || || || || || | Sbjct 45547 GTTG-TCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCT 45489 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 45488 TGACGAAGATCTGCAT 45473 >seq17702 Length=19512 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||| || | ||||| |||||||| || || |||| Sbjct 10518 GACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCGGCG 10459 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| ||||| ||||| || ||||||||||| ||| | || | || | Sbjct 10458 AAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC-CTGAATCTTCGCCTTGAC 10400 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || |||||||| | ||| ||||| | || | || || || || |||||||| Sbjct 10399 GTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTTT 10340 Query 138600 TACAAAAATCTGCATG 138615 |||||| ||||||||| Sbjct 10339 TACAAAGATCTGCATG 10324 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | ||| || | ||| | ||| | | || ||||| ||||| |||||||| Sbjct 10324 GCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 10265 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||| || || || || | |||| |||||||||||||| ||||| Sbjct 10264 AAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGG 10205 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||| ||||| || || ||| ||| ||| | | || | ||||| | ||| || Sbjct 10204 TATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGAC 10145 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || |||||||| || || || ||||| Sbjct 10144 CTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 >seq3419 Length=773737 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||||||||||||||| || || | | ||||| || || || || | Sbjct 381102 TTGATTCCTTTTGAATGTTGTAGTCTGCCAAGGTCCTCCCATCCTCTAGCTGCTTCCCAG 381161 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | | ||| ||||| || || || || || ||||| ||||||| |||| Sbjct 381162 CAAAGATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTTGCCTTTA 381221 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | |||||||| | || | || || || |||| ||| | Sbjct 381222 CGTTATCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATAGTCTTTCCTGTCAAAGTCT 381281 Query 138599 TTACAAAAATCTGCATG 138615 | ||||||||||||||| Sbjct 381282 TAACAAAAATCTGCATG 381298 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || ||||| || | || ||||| | |||||||||| ||||||||||| || ||| Sbjct 376876 CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 376935 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | | ||||| | || ||||| | | | || || | ||||||||| || || Sbjct 376936 -AAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994 Query 138507 TATACCTTCTTTGTCGGTGATTTT-TTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| |||||| | || |||| || | ||| || | || | Sbjct 376995 AATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTG-TCAATGGTATCTGAACTTTCAA 377053 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || ||||| ||||| || |||||||||||||| Sbjct 377054 CTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | ||| || || | | ||||||||||||| ||||||||||| Sbjct 377786 GCCACCCCTCAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGC 377845 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||| || ||||| || | | | || | | ||| ||||| ||||| Sbjct 377846 CAGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGG 377905 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| | || | || | | || | ||||| | ||| | Sbjct 377906 GATTCCCTCCTTATC-CTGAATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAA 377964 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||| || ||||| ||||| || ||||| Sbjct 377965 CCTCGAGGGTGACGGTCTTGCCAGTAAGTGTTTTCACAAAGATTTGCAT 378013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496152204934080