Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3419 122 6e-23 seq3482 86.0 4e-12 seq17702 84.2 2e-11 seq3318 82.4 5e-11 >seq3419 Length=773737 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| ||||||| | || ||||| || || || || || || ||||||||||| ||| Sbjct 376876 CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 376935 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | ||| | || || || || || ||||| | |||| | ||||||||| ||| Sbjct 376936 AAG-GTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| ||||| | || ||| | || || ||||| | |||| || Sbjct 376995 AATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAAC 377054 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || || || || || ||||| || |||||||| |||||| Sbjct 377055 TTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCATA 377103 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || || || ||||| || ||||| || |||||||| || Sbjct 381527 CCACCACGGAGTCGAAGCACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCAGCA 381586 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | ||| || ||||| |||| || | |||||||| ||| Sbjct 381587 AGAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGTGGG 381646 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| ||||||| || ||| | || || ||||| | |||| | Sbjct 381647 ATTCCCTCCTTGTCTTGAATTTTGGCCTTAACATTATCAATGGTATCAGAACTTTCAAAT 381706 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| || || || ||||| || |||||||||||||| Sbjct 381707 TCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || || |||||||| ||| | | | ||||| | ||| Sbjct 377583 TGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGACCATCTTCAAGCTGT 377642 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 |||||||| ||||||| | || || || |||||| ||||||||||| ||| ||| Sbjct 377643 TTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCCTTGTCCTGAATCTTT 377702 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||| | || || || || | |||| || || || || || |||||||| || Sbjct 377703 GC-TTTGACATTGTCAATTGTGTCAGAACTTTCAACTTCCAATGTGATAGTTTTACCGGT 377761 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| ||||| || ||||| ||||| Sbjct 377762 CAGGGTTTTCACGAAAATCTGCAT 377785 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| | || || || ||||| || || ||||| |||||||| || Sbjct 377104 CCTCCCCGAAGTCTAAGTACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 377163 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||| || || | || | | ||| || || ||| Sbjct 377164 AGGGTACGACCATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGG 377223 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||||||| | || || ||||| | | || || Sbjct 377224 ATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTGTCAATTGTATCAGAACTCTCGACC 377283 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || || || ||||||||||| || ||||| || |||||| Sbjct 377284 TCCAAGGTTATAGTCTTCCCTGTCAGAGTCTTAACAAATATCTGCATA 377331 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || ||||| || || || || || |||| | || || Sbjct 381317 ACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCTGCAAGGGTTCTTCCATCCTCA 381376 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| |||| | | |||||||| ||| || || |||||||| Sbjct 381377 AGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGG 381436 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| | || |||||||| | | || || || || || |||||||| Sbjct 381437 ATTTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCAACTTCCAAAGTGATGGTTTTC 381496 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || |||||||||||| Sbjct 381497 CCAGTAAGAGTCTTAACGAAAATTTGCATA 381526 >seq3482 Length=2130385 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || || || | ||| || ||||| || || || ||||||||||| || ||| | Sbjct 22002 CTCAAGACAAGATGGAGAGTAGACTCGTTCTGAATGTTGTAATCTGCAAGTGTTCGACCA 21943 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| |||||||| ||||| ||||||| | ||||||||| ||||||||||||||| Sbjct 21942 TCTTCCAATTGTTTCCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATTCCTTCCTTG 21883 Query 15082 TC 15083 || Sbjct 21882 TC 21881 >seq17702 Length=19512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | ||||| | ||| | ||| || || || || || || || ||||| || Sbjct 10325 TGCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAG 10266 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | |||| || | || ||||| ||| | |||| |||||||||||| | Sbjct 10265 CAAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAG 10206 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || |||||||| || || ||||| ||| || | || ||||| || | | || Sbjct 10205 GTATCCCTTCCTTATCTTGGATCTTTGC-TTTCACGTTGTCAATAGTGTCTGAACTCTCG 10147 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || ||||| || || || |||||||| || || |||||||| Sbjct 10146 ACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 >seq3318 Length=237370 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || ||||| |||||||||||| || | | ||||||| | ||| Sbjct 45675 TGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGT 45616 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| |||||| ||||| ||| || ||||| ||||| || || Sbjct 45615 TTTCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTA 45556 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||||| | || || || ||||| ||||| || || || Sbjct 45555 GCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTG 45496 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 45495 AGTGTCTTGACGAAGATCTGCAT 45473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357314625078740