Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06]
17,764 sequences; 369,781,828 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq3419 127 2e-24
seq17702 123 2e-23
seq3318 107 2e-18
seq2991 91.5 1e-13
>seq3419
Length=773737
Score = 127 bits (140), Expect = 2e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || |||||||||||||| | | |||||| ||| || |||||||| |||
Sbjct 377589 GTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGACCATCTTCAAGCTGTTTGCCA 377648
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035
|| | ||||| | |||||||| || || || || ||||||||| ||| | | ||| ||
Sbjct 377649 GCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCCTTGTCC-TGAATCTTTGCTTT 377707
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
|| | || | ||||| | ||| || ||||| | || | ||||| |||||||| ||
Sbjct 377708 GACATTGTCAATTGTGTCAGAACTTTCAACTTCCAATGTGATAGTTTTACCGGTCAGGGT 377767
Query 127096 TTTTACAAAAATCTGCATG 127114
||| || ||||||||||||
Sbjct 377768 TTTCACGAAAATCTGCATG 377786
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || ||||| | ||||||||| | || ||||| || ||||| |||||||| |
Sbjct 376875 TCCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGC 376934
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || | ||| || | ||| || ||||| | |||| | ||| || || || ||
Sbjct 376935 TAAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || |||||||| |||||| ||||| | || | ||| || | ||| || ||
Sbjct 376995 AATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAAC 377054
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | ||| | || || || || ||||| || ||||||||||||||
Sbjct 377055 TTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || |||||||| ||||| || ||| || | ||| |||||||| || |||
Sbjct 381101 GTTGATTCCTTTTGAATGTTGTAGTCTGCCAAGGTCCTCCCATCCTCTAGCTGCTTCCCA 381160
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||| | |||||| ||||| || || ||||||||||| |||||| |||
Sbjct 381161 GCAAAGATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTTGCCTTT 381220
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | ||| || || || | || | || || || |||| |||
Sbjct 381221 ACGTTATCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATAGTCTTTCCTGTCAAAGTC 381280
Query 127097 TTTACAAAAATCTGCATG 127114
|| |||||||||||||||
Sbjct 381281 TTAACAAAAATCTGCATG 381298
Score = 105 bits (116), Expect = 6e-18
Identities = 164/230 (71%), Gaps = 7/230 (3%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | |||||||| || ||||| ||||| || |
Sbjct 377332 CCACCACGAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 377391
Query 126947 A--TCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004
| || ||| | || ||||||||||| || || | ||||| | ||||||||| || |
Sbjct 377392 AGGTCCTGCCA---TCTTCTAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGG 377448
Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
| || |||||||||||| ||| | | || || | | || | ||||| | ||||||
Sbjct 377449 GGATTCCCTCCTTGTCC-TGAATCTTGGCTTTAACATTATCAATTGTGTCAGAACTCTCC 377507
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| | || | ||||| || || || ||||| ||||| || |||||
Sbjct 377508 ACTTCCAGTGTGATGGTTTTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || || || ||||| || ||||| || | | || ||| ||| ||
Sbjct 377122 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGACCATCTTCA 377181
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||||||||| || |||| | | ||||||||| || || || || ||||| || |
Sbjct 377182 AGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGG 377241
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || || | | || | || || | ||||||||| || | ||| | || ||
Sbjct 377242 ATCTTGGCTTTTACATTGTCAATTGTATCAGAACTCTCGACCTCCAAGGTTATAGTCTTC 377301
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| |||||||| || ||||| ||||||||
Sbjct 377302 CCTGTCAGAGTCTTAACAAATATCTGCAT 377330
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | ||||| || ||||| ||||| || || |
Sbjct 381299 CCACCACGAAGACGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCTGCA 381358
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | ||| || ||||| || ||||| | || | | || || || || ||
Sbjct 381359 AGGGTTCTTCCATCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGGG 381418
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| |||||| ||||| | || | || || | |||||| |||
Sbjct 381419 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCAACT 381478
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||| || || ||||| || || ||||| |||||
Sbjct 381479 TCCAAAGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525
>seq17702
Length=19512
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| || || |||||||| | | || ||| ||| || ||||| || ||
Sbjct 10521 GTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCG 10462
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | | |||||| || ||||| ||||| || |||||| || ||| ||||
Sbjct 10461 GCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTG 10402
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || |||||||| | ||||| || || | || | || |||||||| ||||||
Sbjct 10401 ACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTT 10342
Query 127097 TTTACAAAAATCTGCATG 127114
|||||||| |||||||||
Sbjct 10341 TTTACAAAGATCTGCATG 10324
Score = 105 bits (116), Expect = 6e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | ||||| | |||| ||| | || || || || ||||||||||| || |
Sbjct 10323 CCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 10264
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || || ||| |||||| ||||| || || ||||||
Sbjct 10263 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGT 10204
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT--GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| || ||||| || ||| || ||||| |||| || | ||||| | ||||||||
Sbjct 10203 ATCCCTTCCTTATCTTGGATCTT-TGCTTTCACGTTG-TCAATAGTGTCTGAACTCTCGA 10146
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | || | || |||||||| |||||||| || || || |||||
Sbjct 10145 CCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| ||||| ||||| || | | || || ||| || | ||| || ||
Sbjct 11433 GTCGACTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCTTCCAACTGCTTCCCT 11374
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||| || ||||| || || || || || ||||| ||| || || |||
Sbjct 11373 GCAAAGATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTAGCCTTC 11314
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||| | ||||| || |||| ||| | || ||||| |||| ||
Sbjct 11313 ACATTGTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTGCCTGTCAAGGTC 11254
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||||||||||||
Sbjct 11253 TTCACAAAAATCTGCAT 11237
>seq3318
Length=237370
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || ||||| || ||||||||| | | || || || || |||||||||||
Sbjct 45669 GTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCG 45610
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| |||||||| || || || || || || |||||| ||| || |||
Sbjct 45609 GCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTAGCCTTA 45550
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | ||||| || || | ||| | || |||||||| || ||
Sbjct 45549 ACGTTG-TCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGT 45491
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 45490 CTTGACGAAGATCTGCAT 45473
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| ||| | || ||||| || ||||| || || ||| |
Sbjct 46383 CCACCACGAAGACGGAGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCG 46324
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | || || ||||| ||||| ||| |||||| | |||||| || || ||
Sbjct 46323 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46264
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| || | |||||| | ||||| ||
Sbjct 46263 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCGCTGCTCTCTAC 46205
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | ||| || || || || || || || || ||||||||
Sbjct 46204 CTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157
Score = 104 bits (114), Expect = 2e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| ||||||||| ||||||| | |||||| || || || || |||||||||
Sbjct 46539 TCCTCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTG 46480
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| || ||||| |||| || | |||||| | ||||| || |||| ||| |
Sbjct 46479 TCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCGCTGCTCTCTACCTCGAGGGTGAT 46421
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| || || || || || || || || ||||||||
Sbjct 46420 CGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46385
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| ||| | || ||||| || ||||| || || ||| |
Sbjct 46155 CCACCACGAAGACGGAGAACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCG 46096
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | || || ||||| ||||| ||| |||||| | |||||| || || ||
Sbjct 46095 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46036
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| || | ||||| | ||||| ||
Sbjct 46035 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCAATTGTGTCGCTGCTCTCTAC 45977
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | ||| || || || || || || || || ||||||||
Sbjct 45976 CTCGAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || || || || || || |||||||| ||
Sbjct 45927 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCC 45868
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | || || ||||| ||||| ||| |||||| | |||||| || || ||
Sbjct 45867 AAGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 45808
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| ||| ||| || ||| | |||| || | ||||| | | ||| ||
Sbjct 45807 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTG-TCAATTGTGTCGCTGCCCTCAAC 45749
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||| || || || || || || || || ||||||||
Sbjct 45748 CTCAAGGGTGATCGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 45701
>seq2991
Length=32481
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| | || || | || | ||| | || ||||| || || ||||| ||||||
Sbjct 26346 GCGCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCG 26287
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | || ||| ||| || ||||| || || ||| |||| | |||||||| || ||
Sbjct 26286 GCGAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGG 26227
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||| | | |||| ||| || | |||
Sbjct 26226 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCT 26167
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | || || || |||| || || || || ||||||||
Sbjct 26166 ACCTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 26117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475395215047360
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