Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3419 127 2e-24 seq17702 123 2e-23 seq3318 107 2e-18 seq2991 91.5 1e-13 >seq3419 Length=773737 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || |||||||||||||| | | |||||| ||| || |||||||| ||| Sbjct 377589 GTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGACCATCTTCAAGCTGTTTGCCA 377648 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || | ||||| | |||||||| || || || || ||||||||| ||| | | ||| || Sbjct 377649 GCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCCTTGTCC-TGAATCTTTGCTTT 377707 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||||| | ||| || ||||| | || | ||||| |||||||| || Sbjct 377708 GACATTGTCAATTGTGTCAGAACTTTCAACTTCCAATGTGATAGTTTTACCGGTCAGGGT 377767 Query 127096 TTTTACAAAAATCTGCATG 127114 ||| || |||||||||||| Sbjct 377768 TTTCACGAAAATCTGCATG 377786 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || ||||| | ||||||||| | || ||||| || ||||| |||||||| | Sbjct 376875 TCCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGC 376934 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || | ||| || ||||| | |||| | ||| || || || || Sbjct 376935 TAAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| |||||| ||||| | || | ||| || | ||| || || Sbjct 376995 AATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAAC 377054 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || ||||| || |||||||||||||| Sbjct 377055 TTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||| ||||| || ||| || | ||| |||||||| || ||| Sbjct 381101 GTTGATTCCTTTTGAATGTTGTAGTCTGCCAAGGTCCTCCCATCCTCTAGCTGCTTCCCA 381160 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| ||||| || || ||||||||||| |||||| ||| Sbjct 381161 GCAAAGATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATTTTTGCCTTT 381220 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || || | || | || || || |||| ||| Sbjct 381221 ACGTTATCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATAGTCTTTCCTGTCAAAGTC 381280 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||||||||||||| Sbjct 381281 TTAACAAAAATCTGCATG 381298 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | |||||||| || ||||| ||||| || | Sbjct 377332 CCACCACGAAGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 377391 Query 126947 A--TCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | || ||| | || ||||||||||| || || | ||||| | ||||||||| || | Sbjct 377392 AGGTCCTGCCA---TCTTCTAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGG 377448 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 | || |||||||||||| ||| | | || || | | || | ||||| | |||||| Sbjct 377449 GGATTCCCTCCTTGTCC-TGAATCTTGGCTTTAACATTATCAATTGTGTCAGAACTCTCC 377507 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | || | ||||| || || || ||||| ||||| || ||||| Sbjct 377508 ACTTCCAGTGTGATGGTTTTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || ||||| || ||||| || | | || ||| ||| || Sbjct 377122 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGACCATCTTCA 377181 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||||||||| || |||| | | ||||||||| || || || || ||||| || | Sbjct 377182 AGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGG 377241 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | || | || || | ||||||||| || | ||| | || || Sbjct 377242 ATCTTGGCTTTTACATTGTCAATTGTATCAGAACTCTCGACCTCCAAGGTTATAGTCTTC 377301 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || ||||| |||||||| Sbjct 377302 CCTGTCAGAGTCTTAACAAATATCTGCAT 377330 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||||| || ||||| ||||| || || | Sbjct 381299 CCACCACGAAGACGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCTGCA 381358 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || ||||| | || | | || || || || || Sbjct 381359 AGGGTTCTTCCATCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGGG 381418 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| |||||| ||||| | || | || || | |||||| ||| Sbjct 381419 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCAACT 381478 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || ||||| || || ||||| ||||| Sbjct 381479 TCCAAAGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525 >seq17702 Length=19512 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | | || ||| ||| || ||||| || || Sbjct 10521 GTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCG 10462 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | | |||||| || ||||| ||||| || |||||| || ||| |||| Sbjct 10461 GCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTG 10402 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || |||||||| | ||||| || || | || | || |||||||| |||||| Sbjct 10401 ACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTT 10342 Query 127097 TTTACAAAAATCTGCATG 127114 |||||||| ||||||||| Sbjct 10341 TTTACAAAGATCTGCATG 10324 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | |||| ||| | || || || || ||||||||||| || | Sbjct 10323 CCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 10264 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| ||||| || || |||||| Sbjct 10263 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGT 10204 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT--GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||| || ||| || ||||| |||| || | ||||| | |||||||| Sbjct 10203 ATCCCTTCCTTATCTTGGATCTT-TGCTTTCACGTTG-TCAATAGTGTCTGAACTCTCGA 10146 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || |||||||| |||||||| || || || ||||| Sbjct 10145 CCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| ||||| ||||| || | | || || ||| || | ||| || || Sbjct 11433 GTCGACTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCTTCCAACTGCTTCCCT 11374 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| || ||||| || || || || || ||||| ||| || || ||| Sbjct 11373 GCAAAGATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTAGCCTTC 11314 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||| || |||| ||| | || ||||| |||| || Sbjct 11313 ACATTGTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTGCCTGTCAAGGTC 11254 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 11253 TTCACAAAAATCTGCAT 11237 >seq3318 Length=237370 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||| || ||||||||| | | || || || || ||||||||||| Sbjct 45669 GTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCG 45610 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || || || || |||||| ||| || ||| Sbjct 45609 GCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTAGCCTTA 45550 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||||| || || | ||| | || |||||||| || || Sbjct 45549 ACGTTG-TCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGT 45491 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 45490 CTTGACGAAGATCTGCAT 45473 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || ||||| || || ||| | Sbjct 46383 CCACCACGAAGACGGAGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCG 46324 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || ||||| ||||| ||| |||||| | |||||| || || || Sbjct 46323 AGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46264 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| || | |||||| | ||||| || Sbjct 46263 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCGCTGCTCTCTAC 46205 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||| || || || || || || || || |||||||| Sbjct 46204 CTCGAGGGTGATCGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||||||| ||||||| | |||||| || || || || ||||||||| Sbjct 46539 TCCTCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTG 46480 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||| |||| || | |||||| | ||||| || |||| ||| | Sbjct 46479 TCCTGGATCTTGGCCTTGACGTTG-TCAATGGTGTCGCTGCTCTCTACCTCGAGGGTGAT 46421 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || || || || || || || |||||||| Sbjct 46420 CGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46385 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || ||||| || || ||| | Sbjct 46155 CCACCACGAAGACGGAGAACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCG 46096 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || ||||| ||||| ||| |||||| | |||||| || || || Sbjct 46095 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 46036 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| || | ||||| | ||||| || Sbjct 46035 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCAATTGTGTCGCTGCTCTCTAC 45977 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||| || || || || || || || || |||||||| Sbjct 45976 CTCGAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || || || || || || |||||||| || Sbjct 45927 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCC 45868 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || ||||| ||||| ||| |||||| | |||||| || || || Sbjct 45867 AAGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 45808 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||| | |||| || | ||||| | | ||| || Sbjct 45807 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTG-TCAATTGTGTCGCTGCCCTCAAC 45749 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || || || || || || || || |||||||| Sbjct 45748 CTCAAGGGTGATCGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 45701 >seq2991 Length=32481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | || || | || | ||| | || ||||| || || ||||| |||||| Sbjct 26346 GCGCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCG 26287 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || ||| ||| || ||||| || || ||| |||| | |||||||| || || Sbjct 26286 GCGAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGG 26227 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||| | | |||| ||| || | ||| Sbjct 26226 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCT 26167 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || |||| || || || || |||||||| Sbjct 26166 ACCTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475395215047360