Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq17702 89.7 5e-13 seq2991 86.0 6e-12 seq3419 82.4 7e-11 >seq17702 Length=19512 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGT 45277 |||||||| || || ||||||||||| || ||||| || |||| || | || ||||| Sbjct 10446 TGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTGA-CGTTATCAACGGT 10388 Query 45278 GTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 ||| || ||| || || ||||| | || |||||||| |||||||||||||| || || Sbjct 10387 GTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTG 10328 Query 45338 CAT 45340 ||| Sbjct 10327 CAT 10325 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || || ||||| | ||||| ||||||||||| || || || ||||| || Sbjct 11392 ATCTTCCAACTGCTTCCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTT 11333 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||| ||||| || || | |||| |||||| || ||| || ||||| |||| Sbjct 11332 ATCCTGAATCTTAGCCTTCACATTGTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAAT 11273 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || || |||||||| |||||| Sbjct 11272 GGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCATC 11236 >seq2991 Length=32481 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| ||||| ||||| ||||||||||||||| || ||| | ||| || Sbjct 26325 ACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCGAGGGTACGACCATCCTCA 26266 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | || ||||||||||| |||||||| || || || || Sbjct 26265 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 26206 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||| || || ||||| || || || || | || || Sbjct 26205 ATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTACCTCTAGGGTTATGGTCTTA 26146 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | || || || || || |||||| Sbjct 26145 CCCGTCAAGGTCTTGACGAAGATCTGCATC 26116 >seq3419 Length=773737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||||||||| || | |||| | ||| || | || Sbjct 381323 TGGAGTGTAGATTCCTTTTGGATATTATAGTCTGCAAGGGTTCTTCCATCCTCAAGCTGC 381382 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || |||| | | ||| ||||| || || || || || || || || |||||| Sbjct 381383 TTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGGATTTTT 381442 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | || || ||| ||| ||||| | ||| | ||||| || || Sbjct 381443 GCCTTGACATTGTCAATAGTATCAGAACTCTCAACTTCCAAAGTGATGGTTTTCCCAGTA 381502 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||||||||| Sbjct 381503 AGAGTCTTAACGAAAATTTGCAT 381525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451902832689440