Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3345 132 6e-26 seq3490 84.2 3e-11 >seq3345 Length=549657 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || ||||| || || ||||| || || |||||| ||||| ||||| ||||| Sbjct 163839 TGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCG 163898 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||| |||| |||||||||||| || || || || ||||||||||| || || ||||| Sbjct 163899 CGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACAA 163958 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || | |||||||||||||||| Sbjct 163959 GCGAAGGCCACGAGACGCTCGGCAAAGG 163986 >seq3490 Length=2069338 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/279 (67%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| |||||||||||||||||||| ||||| || || || || | ||||||||| | Sbjct 1569185 GAATCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--T 1569242 Query 12851 CATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | | ||| || | | ||| | || || || ||||| || ||||| || || || Sbjct 1569243 CCTCCGAGACCAGCTCCTCTCTGCCTTCCCACTGCATCAATCTCATCAATAAACACAATG 1569302 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| ||| ||| || || | ||||| |||||| ||||| || ||| Sbjct 1569303 CAGGGTGCCTTTGATTTGGCTTTCTCGAACAAATCTCTCACTCTGGAAGCACCAACTCCC 1569362 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||| || | | || | ||| || |||||| || | ||| || Sbjct 1569363 ACAAACAACTCCACGAACTCTGATGCAGCACAAGAGAAGAAGGGCACCCCAGCTTCTCCA 1569422 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || | |||| || | | ||||| || || |||||| Sbjct 1569423 GCAACTGCTCTAGCTAATAATGTCTTACCAGTACCTGGT 1569461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613370970726240