Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3345 159 6e-34 >seq3345 Length=549657 Score = 159 bits (176), Expect = 6e-34 Identities = 546/838 (65%), Gaps = 20/838 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||||||||||||||| |||| | || || ||||| | | ||||| || Sbjct 163553 CTTCTCGAAAAAGTTGGTCTTACCCTGTAACGAAATCAGCTCCATCCAATCAAATGGATT 163612 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||||| ||| ||| | ||| ||||| |||||| || ||||| || || || Sbjct 163613 AGCCACGTTATACATCTTACCATGTCCCAGAGCACCCAGCAGCCGATCTGCTACGAACTC 163672 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA--GCCTAACGGGGAGCGCTTCC 159826 |||||| || ||| | || | ||| || || | || || || |||||||| || Sbjct 163673 GATGTACTGACTCATGAGATCCCCGTTCATGCCGACCAACGCGCAA--GGGAGCGCGTCG 163730 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGT-A 159885 | | ||| ||| |||| || || || || || |||||||| | ||||| || | | Sbjct 163731 CAAACAAATTCCCTCTCGATATCCACGGCATCCCTCACAATCCCCCGCACACGCTCTTCA 163790 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | | | || || || | ||| | |||| || ||||| |||||||| || || || Sbjct 163791 CTCAGCCTATTCCTCAA--TAATCCGT--ACAGCAGACACGCGAAGTCGCAATGAAGCCC 163846 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 ||||| || || |||| ||||||||| | | |||| || ||||| | || ||| ||| Sbjct 163847 TTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCGCGCTTTTT 163906 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACG 160064 ||||| ||||| | |||| ||| | | | | || ||||| || || || || || | Sbjct 163907 CAGCCAGAAAATCG-CGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACAAGCGAAGG 163965 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 ||||||| | ||| ||| ||| | | | | | | |||| | | ||||| || | Sbjct 163966 CCACGAGACGCTCGGCAA---AGGTCTCCGAGCCGTCGATCCAGCGTAGAGCCCAATCGG 164022 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| || | ||| || ||| ||| |||||| ||| | |||| ||| || Sbjct 164023 CCTTCTTGGCCACGCAAGGGATGGTCTCAACGGCGCGAAAGAGATGATCCTTCTCGCTCG 164082 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGA--GTACATTTCTGCGTGCACATTTTCGAT 160242 ||||| || ||| | | || | || |||||| || | ||| | ||| ||||| Sbjct 164083 AGTCCTTAATGTAAGTCTCGAGAAG--TAGACTGTACATCTCGGAGTGGATATTCTCGAT 164140 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CTGCACCTCCTGTGTGAACC 160301 || || || || ||||| |||| ||| | ||| || || |||| | Sbjct 164141 TGCGATTTGGAACCCATAGAAGGCACGAGCCT-CAGCCACCTGAACATCAGACATGAAAC 164199 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | ||||| || || | || |||| ||| || || || || | ||||||| Sbjct 164200 GAGAAGCGAGATTCTCAAGTACAATTCCATCGGAGGCGGCGAAAAATGCAAGGACGTGAG 164259 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 |||||| || | ||||| | ||| | | || ||||||| | || |||| | Sbjct 164260 TGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATTCTCCCAGTCGCGGATATCCTGGGAGA 164319 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 |||||||| || || |||| | |||| || | |||||||| ||||||| Sbjct 164320 GGTCAACCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATTTCCCAGAT 164377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794978635787840