Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3318 127 2e-24 seq3447 105 8e-18 seq3419 105 8e-18 seq2991 105 8e-18 seq17702 98.7 1e-15 >seq3318 Length=237370 Score = 127 bits (140), Expect = 2e-24 Identities = 155/208 (75%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||| |||| ||| || || |||| |||||||| || |||||||| Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | | || |||||| |||||| ||| | ||| Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTAGCCTT-AACGTT 45545 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| ||||| |||| |||||||| ||||| || || || || || Sbjct 45544 GTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGAC 45485 Query 46582 AAAGATTTGCAT---TTTGCACAAACAA 46606 ||||| ||||| ||| ||||||||| Sbjct 45484 GAAGATCTGCATCTGTTTTCACAAACAA 45457 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| || || || ||||||| || || | |||| ||| Sbjct 46137 ACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCGAGGGTCCTGCCGTCCTCG 46078 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| |||| | ||||||||| | || | || |||||||||| | Sbjct 46077 AGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 46018 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||||| || || || | ||||| || || Sbjct 46017 ATCTTGGCCTTGA-CGTTGTCAATTGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTCTT 45959 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || ||||| ||||| Sbjct 45958 CCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || | | || | |||| ||||||||||| |||||||| Sbjct 45891 TCCTTCTGGATGTTGTAATCCGCCAAGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAG 45832 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | || |||||| ||| |||||| ||| | ||| Sbjct 45831 ATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT-AACGTT 45773 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| || || || | ||||| || || ||||| || || || || Sbjct 45772 GTCAATTGTGTCGCTGCCCTCAACCTCAAGGGTGATCGTCTTACCCGTTAGGGTCTTGAC 45713 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 45712 GAAGATCTGCAT 45701 >seq3447 Length=1078458 Score = 105 bits (116), Expect = 8e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | || | ||||| |||| ||| ||||| ||||| || ||||| | Sbjct 808029 CCTCCCCTGAGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCG 808088 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||| || || || ||||| |||| ||||||||||| | || Sbjct 808089 AGCGTGCGGCCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGG 808148 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| ||||||| |||| | | | | ||| || || || || Sbjct 808149 ATTCCCTCCTTATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACC 808208 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599 || | || ||||| || || || || ||||| || || || ||||||||||| Sbjct 808209 TCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCATTTTGCA 808261 >seq3419 Length=773737 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| | |||||||| | || || ||||| ||||| || || Sbjct 377822 CTCCTTTTGGATGTTGTAGTCAGCCAGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAA 377881 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||| ||| ||||| ||||| | Sbjct 377882 AATCAATCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCCTGAATCTTAGCCTTGACATT 377941 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||| ||| ||||| || || ||||| Sbjct 377942 ATCAATAGTGTCAGAGCTC---TCAACCTCGAGGGTGACGGTCTTGCCAGTAAGTGTTTT 377998 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 377999 CACAAAGATTTGCAT 378013 >seq2991 Length=32481 Score = 105 bits (116), Expect = 8e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| ||||| || || | || ||||||| ||| |||||| |||||||| || |||| Sbjct 26344 GCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGC 26285 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || || | || || |||||||| |||||||| || | ||||||||||| | || Sbjct 26284 GAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 26225 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| |||||| ||| | | | | || || || || || Sbjct 26224 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTAC 26165 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || ||||| || ||||||| || || || ||||| ||||| || Sbjct 26164 CTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATCTT 26114 >seq17702 Length=19512 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || || || | |||||||| | || ||||| || ||||||||||| | Sbjct 10325 TGCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAG 10266 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| ||||| ||||| | | Sbjct 10265 CAAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAG 10206 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | | ||||| || |||||| | ||| ||| | | | ||||| ||| Sbjct 10205 GTATCCCTTCCTTATCTTGGATCTT-TGCTTTCACGTTGTCAATAGTGTCTGAACTC--- 10150 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 10149 TCGACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || | || || || | || |||||||||||||||||||| Sbjct 10516 CTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAA 10457 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || || |||||| |||||| ||||| | Sbjct 10456 GATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTT 10397 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | || ||||| |||| || || || | |||||||| ||||| || || ||||| Sbjct 10396 ATCAACGGTGTCAGAGCTC---TCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTTT 10340 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 10339 TACAAAGATCTGCAT 10325 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || | || ||||| | || |||||||||||||||||||| Sbjct 10744 CTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 10685 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||| | | ||||||||| | || | || || |||||| |||||| ||||| | Sbjct 10684 TATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTT 10625 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||| ||||| || || || || Sbjct 10624 ATCAATGGTGTCAGAGCTC---TCAACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTT 10568 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 10567 GACAAAGATCTGCAT 10553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565112888813280