Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17702 86.0 4e-12 >seq17702 Length=19512 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| ||||| ||||| || || || ||| |||| || | ||||||||| ||||| Sbjct 10971 TCTTTCTGTATGTTATAGTCAGCTAAGGTGCGACCATCCTCAAGCTGTTTCCCGGCAAAA 10912 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTT-TGTTTA-ATCG 39646 || | | ||| ||||| | || | |||||| || || ||||| | |||| || | Sbjct 10911 ATGAGCCTCTGTTGATCAGGAGGGATGCCTTCCTTATCCTGGATTTTCGTCTTTACATTG 10852 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || |||||| | || || || |||| ||| || || ||||| || | || || | Sbjct 10851 TC--TATTGTGTCAGAACTCTCAACCTCCAGAGTGATGGTCTTACCAGTGAGGGTCTTGA 10794 Query 39707 CGAAGATCTGCAT 39719 | ||||||||||| Sbjct 10793 CAAAGATCTGCAT 10781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347294394915812