Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3345 262 4e-65 seq17702 136 4e-27 seq3318 132 5e-26 seq3419 109 5e-19 >seq3345 Length=549657 Score = 262 bits (290), Expect = 4e-65 Identities = 596/882 (68%), Gaps = 26/882 (3%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| ||||| || || || |||| || ||||| ||| Sbjct 163533 TTCTGGTACTCGCCTACTCGCTTCTCGAAAAAGTTGGTCTTACCCTGTAACGAAATCAGC 163592 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG--TGCCGATCAGGTCGACGA 132721 ||| |||| || || || || ||| || ||| || | ||| | | | Sbjct 163593 TCCATCCAATCAAATGGATTAGCCACGTTATACATCTTACCATGTCC--CAGAGCACCCA 163650 Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA 132781 |||||| || || |||||||||||||| || |||| || | || | || | || Sbjct 163651 GCAGCCGATCTGCTACGAACTCGATGTACTGACTCATGAGATCCCCGTTCATGCCGACCA 163710 Query 132782 GACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 |||| | || ||||| ||| | ||| |||||| | || || || | || Sbjct 163711 -ACGCGCAAGGGAGCGCGTCGCAAACAAATTCCCTCTCGATATCCACGGCATCCCTCACA 163769 Query 132841 ATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAA--ATGCTTGAACATCAAGCAAG 132898 || ||| || ||| | | ||| ||| | | ||| || | | ||| || || | Sbjct 163770 ATCCCCCGCACACGCTCTTCACTCAGCCTATTCCTCAATAATCCGT--ACAGCAGACACG 163827 Query 132899 CAAAGTCGCAATGCAAGCCCT-CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCG 132957 | ||||||||||| ||||||| |||| | |||||||| |||||| ||| || | || Sbjct 163828 CGAAGTCGCAATG-AAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCA 163886 Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017 ||||| || ||||| ||||| ||||| || || ||| ||| ||||| ||||||| Sbjct 163887 GGCATCAGACCGCGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATT 163946 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077 || ||||| ||||| ||||| || |||||| | || || || || | ||||| Sbjct 163947 CCTTCGACACAAGCGAAGGCCACGAGACGCTCGGCAAAGGTC---TCCGAGCCGTCGATC 164003 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGATGGCGTTCA 133135 ||||| || ||||| |||||||| ||| | ||||| || || || || | |||| | Sbjct 164004 CAGCGTAGAGCCCAATCGGCCTT--CTTGGCCACGCAAGGGATGGTCTCAACGGCGCGAA 164061 Query 133136 ACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAAT--ACAT 133193 | | | | ||||| |||| | ||| || |||| || | || | |||| Sbjct 164062 AGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAG--TAGACTGTACAT 164119 Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253 || ||||| | ||||| || |||||||| || || || ||| || ||||| |||| Sbjct 164120 CTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCCTCAGCCAC 164179 Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313 ||| || || |||||| | ||||| || || || || ||| |||||| Sbjct 164180 CTGAACATCAGACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATCGGAGGCGGC 164239 Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCA 133370 |||||| || || ||||| ||||||| ||||| |||| |||||| ||| |||||| Sbjct 164240 GAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATTCTCCCA 164299 Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 |||||| | |||| ||| ||||| ||||||||| | ||||| ||||||||||| || || Sbjct 164300 GTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTT 164359 Query 133431 TTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAAT 133472 |||||||| ||| || || | ||| || || ||||| || Sbjct 164360 CTTGTACATTTCCCAGATCTCTGGATACTGAATCGGAAACAT 164401 >seq17702 Length=19512 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| ||||| || | || |||||| | Sbjct 10097 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAGACCATAACTCTGGAGGTCGAGAGTTCA 10156 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||| |||| || || || || || || | ||||| Sbjct 10157 GACACTATTGACAACG-TGAAAGCAAAGATCCAAGATAAGGAAGGGATACCTCCTGACCA 10215 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||||||||| |||||||| |||| |||||||| |||||||| Sbjct 10216 ACAGCGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCCTTGCTGACTACAA 10275 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||||| | || || ||| |||| || || ||||| || ||| Sbjct 10276 TATTCAGAAGGAATCCACTCTCCATCTGGTTCTTCGATTGAGGGGTGGC 10324 >seq3318 Length=237370 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 ||| | ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| Sbjct 45467 AAACAGATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAG 45526 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 || ||||| | | | |||| |||| | || |||| |||||||| || || || | Sbjct 45527 AGCAGCGACACCATCGACAACG-TTAAGGCTAAGATCCAGGACAAAGAAGGGATCCCACC 45585 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 ||||| ||||| || || | ||| || |||||||| || |||| || ||||| ||| Sbjct 45586 GGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGA 45645 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||||||||||||| |||| || || Sbjct 45646 TTACAACATCCAAAAGGAATCGACTCTCCA 45675 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || |||||| | || || |||| || | Sbjct 45701 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACGATCACCCTTGAGGTTGAGGGCAGC 45760 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | || |||| || || ||||| || ||| | ||||| Sbjct 45761 GACACAATTGACAACG-TTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCA 45819 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || ||||| || |||| | ||| | || ||||| Sbjct 45820 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCTTGGCGGATTACAA 45879 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| |||| || || |||||||| ||| Sbjct 45880 CATCCAGAAGGAATCGACCCTCCACTTGGTGCTCCGT 45916 >seq3419 Length=773737 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||| ||| ||||| |||| || ||| | | Sbjct 378013 ATGCAAATCTTTGTGAAAACACTTACTGGCAAGACCGTCACCCTCGAGGTTGAGAGCTCT 377954 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | || || |||||||| || | ||||| Sbjct 377953 GACACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGAATCCCTCCAGACCAG 377894 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || ||||||||||| || || | ||||| || ||||||||| Sbjct 377893 CAGAGATTGATTTTTGCTGGCAAACAGCTTGAGGATGGCCGCACTCTGGCTGACTACAAC 377834 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| | || || || ||||| || ||| |||| || ||| Sbjct 377833 ATCCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGTCTGAGGGGTGGC 377786 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || ||||||||||| | || || ||| | Sbjct 377557 ATGCAAATCTTTGTGAAAACCCTCACTGGGAAAACCATCACACTGGAAGTGGAGAGTTCT 377498 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||||| || || | ||||| |||||||| ||| | || || Sbjct 377497 GACACAATTGATAATGTTAAAGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGATCAG 377438 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | |||||||||||||| || || | || ||| ||||||||| Sbjct 377437 CAGAGGTTGATATTTGCGGGCAAACAGCTAGAAGATG-GCAGGACCTTGCTGACTACAAC 377379 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || || |||||||| || Sbjct 377378 ATTCAGAAGGAGTCTACTCTTCACTTGGTGCTTCG 377344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || || ||| | Sbjct 381525 ATGCAAATTTTCGTTAAGACTCTTACTGGGAAAACCATCACTTTGGAAGTTGAGAGTTCT 381466 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | |||||||| ||||| ||||| || || | |||||| Sbjct 381465 GATACTATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAA 381406 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || ||||||| | || || || ||||| || || | | ||||| ||||| || Sbjct 381405 CAAAGGCTCATATTTGCTGGTAAGCAGCTTGAGGATGGAAGAACCCTTGCAGACTATAAT 381346 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || |||||||| ||| Sbjct 381345 ATCCAAAAGGAATCTACACTCCACTTGGTGCTCCGT 381310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||| || || ||||| || || |||||||| || |||| || ||| | Sbjct 376875 AATGCAGATATTTGTGAAGACGCTGACAGGAAAAACCATTACTCTCGAGGTTGAGAGTTC 376816 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | |||| || |||| ||||||||||| ||||| | || || Sbjct 376815 TGATACAATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGATCA 376756 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || || |||||||| || | || ||||| || ||||| Sbjct 376755 GCAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAGGATGGACGTACCCTGGCAGATTACAA 376696 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || |||||| | || || || Sbjct 376695 CATCCAGAAGGAGTCCACCCTGCATCTTGTCCTCCG 376660 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||||| ||||| || || ||||| | ||||||||| |||| |||| || || || Sbjct 377018 AAAATCCAAGACAAGGAAGGGATTCCACCAGACCAACAGAGGCTGATTTTTGCTGGTAAG 376959 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||| |||| || | | | ||| | || |||||||| || ||||| | || || ||| Sbjct 376958 CAGTTGGAGGATGGGAGGACCTTAGCTGATTACAACATTCAGAAGGAGTCAACTCTCCAT 376899 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || ||| | || || Sbjct 376898 TTGGTGCTTCGATTGCGTGGTGG 376876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500061736629760