Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3345 159 4e-34 seq3490 109 7e-19 >seq3345 Length=549657 Score = 159 bits (176), Expect = 4e-34 Identities = 377/558 (68%), Gaps = 16/558 (3%) Strand=Plus/Minus Query 101770 AGTATCCACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGA 101827 |||||||| | |||||||| | || |||||||| | | || || |||| || || Sbjct 164388 AGTATCCAGAGATCTGGGAAATGTACAAGAAGGCGGAG--GCGTCGTTCTGGACGGCCGA 164331 Query 101828 AGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAATGAAAATGAAAA 101884 ||||| || ||||| ||||| | ||| ||| ||| | |||| || | ||| Sbjct 164330 GGAGGTTGACCTCTCCCAGGATATCCGCGACTGGGAGAATACCTTAAACGACGACGAACG 164271 Query 101885 GAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAA 101944 | ||||| | || |||| ||||| || || | |||||||||||||| ||||||| Sbjct 164270 CCACTTCATCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAATTGTACTTGAGAA 164211 Query 101945 TATCAATAACAACTTTGCTGA-TGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGT 102003 | || | | ||| || ||| || || |||| || | | ||||||| || Sbjct 164210 TCTCGCTT-CTCGTTTCATGTCTGATGTTCAGGTGGCTGAGGCTCGTGCCTTCTATGGGT 164152 Query 102004 ATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTAT 102062 ||| || ||| || | | || |||| |||||| ||| | || | || Sbjct 164151 TCCAAA-TCGCAATCGAGAATATCCACTCCGAGATGTACAGTCTACTTCTCGAGACTTAC 164093 Query 102063 ATTAAGGA-TGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTAT 102121 |||||||| | | || |||||| | || |||||| ||| | | || | || || | Sbjct 164092 ATTAAGGACTCGAGC-GAGAAGGATCATCTCTTTCGCGCCGTTGAGACCATCCCTTGCGT 164034 Query 102122 TCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGA 102181 ||||| || ||||||||| | ||| | || ||| ||||||| || Sbjct 164033 GGCCAAGAAGGCCGATTGGGCTCTACGCTGGATCGACGGC---TCGGAGACCTTTGCCGA 163977 Query 102182 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 102241 ||| ||| | || || || ||||| || || ||||||||||| |||||||||||||| || Sbjct 163976 GCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTTCTGCGCGAT 163917 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301 || ||||| || ||||| ||||| ||||| |||||| ||||||||||||||| || || Sbjct 163916 TTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTCATTTC 163857 Query 102302 TCGTGACGAGGGACTCCA 102319 || ||||| || || || Sbjct 163856 ACGAGACGAAGGGCTTCA 163839 >seq3490 Length=2069338 Score = 109 bits (120), Expect = 7e-19 Identities = 194/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| ||||| ||||| |||||||| || || | ||||||||| || | Sbjct 1569186 AATCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCT--C 1569243 Query 16035 ATAC--CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | |||||| | | ||| ||||||| ||||||||||||||||| || || |||| Sbjct 1569244 CTCCGAGACCAGCTCCTCTCTGCCTTCCCACTGCATCAATCTCATCAATAAACACAATGC 1569303 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 | ||| ||| || || || | ||| | ||| || | || || || || Sbjct 1569304 AGGGTGCCTTTGATTTGGCTTTCTCGAACAAATCTC--TCACTCTGGAAGCACCAACTCC 1569361 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| |||||| || | || || | ||| || |||||| || || ||| || Sbjct 1569362 CACAAACAACTCCACGAACTCTGATGCAGCACAAGAGAAGAAGGGCACCCCAGCTTCTCC 1569421 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| |||| || | | |||||||| |||||||| Sbjct 1569422 AGCAACTGCTCTAGCTAATAATGTCTTACCAGTACCTGG 1569460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620604564150080