Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3345 118 1e-21 >seq3345 Length=549657 Score = 118 bits (130), Expect = 1e-21 Identities = 385/582 (66%), Gaps = 17/582 (3%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 |||||||||||| || || || |||||||| || |||| || |||||||| || || Sbjct 163838 ATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 163897 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | || || ||||| || || || || || || || |||||||| || || ||||| Sbjct 163898 GCGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACA 163957 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGT---CGAGACTTGTCGAACCACTTGAGAGC 119683 ||||| || | |||||||| || |||||| |||| | ||||| ||| ||||| Sbjct 163958 AGCGAAGGCCACGAGACGCTCGGC-AAAGGTCTCCGAGCC--GTCGATCCAGCGTAGAGC 164014 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAA-AGTTGCTTCT 119742 ||| | |||||| | | ||| |||| || | | ||| ||||| || || | || Sbjct 164015 CCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACGGC-GCGAAAGAGATGATCCT 164073 Query 119743 TTTCAGCACCA-TCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACC 119801 | || || | | |||||||| || | || | ||| | ||| |||| || | Sbjct 164074 TCTC-GCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGACTGTACATCTCGGAGTGGATA 164132 Query 119802 ATTTC-ATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GT 119859 | || |||| | || | |||| || | ||||| || | | || || || | Sbjct 164133 TTCTCGATTGCG-ATTTGGAACCCATAGAAGGCACGAGCCTCAGCCACCTGAACATCAGA 164191 Query 119860 CAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTA 119919 || ||| | | || ||| |||| |||||||||||||| | ||||| ||||| | Sbjct 164192 CATGAAACGAGAAG-CGAGATTCTCAAGTACAATTCCATCGGAGGCGGCGAAAAATGCAA 164250 Query 119920 AGATGTACTTTATGAATTTCTGTTCATTATCGTTGA--GTGTT-TTCCAGTCGTCCATAT 119976 || || | ||||| | |||| | ||||| | || || | ||||||| |||| Sbjct 164251 GGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATTCTCCCAGTCGCGGATAT 164310 Query 119977 CTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTT 120036 | | || | ||| ||||| || || |||||| ||| || ||||| || || | || Sbjct 164311 CCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATTT 164370 Query 120037 CCCAAAGTTCAGGATACTTCAGGGGAAAAACGGTGAATCTGT 120078 |||| | || ||||||| | ||||| | | ||| |||| Sbjct 164371 CCCAGATCTCTGGATACTGAATCGGAAACATGCAGAACCTGT 164412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588845217879200