Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06]
17,764 sequences; 369,781,828 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq3345 118 1e-21
>seq3345
Length=549657
Score = 118 bits (130), Expect = 1e-21
Identities = 385/582 (66%), Gaps = 17/582 (3%)
Strand=Plus/Plus
Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566
|||||||||||| || || || |||||||| || |||| || |||||||| || ||
Sbjct 163838 ATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 163897
Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626
| || || ||||| || || || || || || || |||||||| || || |||||
Sbjct 163898 GCGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACA 163957
Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGT---CGAGACTTGTCGAACCACTTGAGAGC 119683
||||| || | |||||||| || |||||| |||| | ||||| ||| |||||
Sbjct 163958 AGCGAAGGCCACGAGACGCTCGGC-AAAGGTCTCCGAGCC--GTCGATCCAGCGTAGAGC 164014
Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAA-AGTTGCTTCT 119742
||| | |||||| | | ||| |||| || | | ||| ||||| || || | ||
Sbjct 164015 CCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACGGC-GCGAAAGAGATGATCCT 164073
Query 119743 TTTCAGCACCA-TCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACC 119801
| || || | | |||||||| || | || | ||| | ||| |||| || |
Sbjct 164074 TCTC-GCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGACTGTACATCTCGGAGTGGATA 164132
Query 119802 ATTTC-ATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GT 119859
| || |||| | || | |||| || | ||||| || | | || || || |
Sbjct 164133 TTCTCGATTGCG-ATTTGGAACCCATAGAAGGCACGAGCCTCAGCCACCTGAACATCAGA 164191
Query 119860 CAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTA 119919
|| ||| | | || ||| |||| |||||||||||||| | ||||| ||||| |
Sbjct 164192 CATGAAACGAGAAG-CGAGATTCTCAAGTACAATTCCATCGGAGGCGGCGAAAAATGCAA 164250
Query 119920 AGATGTACTTTATGAATTTCTGTTCATTATCGTTGA--GTGTT-TTCCAGTCGTCCATAT 119976
|| || | ||||| | |||| | ||||| | || || | ||||||| ||||
Sbjct 164251 GGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATTCTCCCAGTCGCGGATAT 164310
Query 119977 CTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTT 120036
| | || | ||| ||||| || || |||||| ||| || ||||| || || | ||
Sbjct 164311 CCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATTT 164370
Query 120037 CCCAAAGTTCAGGATACTTCAGGGGAAAAACGGTGAATCTGT 120078
|||| | || ||||||| | ||||| | | ||| ||||
Sbjct 164371 CCCAGATCTCTGGATACTGAATCGGAAACATGCAGAACCTGT 164412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588845217879200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |