Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3490 116 4e-21 seq3345 109 6e-19 seq3444 89.7 6e-13 >seq3490 Length=2069338 Score = 116 bits (128), Expect = 4e-21 Identities = 193/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| || || |||||||| || || | ||||||||| || | Sbjct 1569186 AATCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCCT--C 1569243 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | ||||| | | ||| ||||||| ||||||||||||||||| || ||||| | Sbjct 1569244 CTCCGAGACCAGCTCCTCTCTGCCTTCCCACTGCATCAATCTCATCAATAAACACAATGC 1569303 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| ||| ||| | || || | ||| | || || || || || || | Sbjct 1569304 AGGGTGCCTTTGATTTGGCTTTCTCGAACAAATCTCTCACTCTGGAAGCACCAACTCCCA 1569363 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| |||||| || | || || | ||| || |||||| || || ||| || | Sbjct 1569364 CAAACAACTCCACGAACTCTGATGCAGCACAAGAGAAGAAGGGCACCCCAGCTTCTCCAG 1569423 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| |||| || | | |||||||| |||||||| Sbjct 1569424 CAACTGCTCTAGCTAATAATGTCTTACCAGTACCTGG 1569460 >seq3345 Length=549657 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || || || ||||| ||||| || || || |||||| || || ||||| ||||| Sbjct 163839 TGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCG 163898 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 ||||| |||| ||| |||| |||||||| || || ||||||||||| || || ||||| Sbjct 163899 CGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACAA 163958 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 || || || | || |||||||| |||| Sbjct 163959 GCGAAGGCCACGAGACGCTCGGCAAAGG 163986 >seq3444 Length=1312069 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| ||||||||||| ||||| || | || ||| ||||| | ||| Sbjct 1026607 TGAGGCCTTGGTGTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGA 1026666 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | | ||| || | | ||||| ||||| || | | ||| || || | || Sbjct 1026667 GACATCATATGGTACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCG 1026726 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| || || ||| || | | || | || || || | || || Sbjct 1026727 ACTCTCATCAGCATGTGCTGTGGCCTTT-CAACAACCTTCCCTTGAACCTTTAAGAGGTA 1026785 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||||||||||| ||||| ||| || | ||| | ||||| Sbjct 1026786 GGACCTCTCAAGGGTTTTGAATCCAAAATAATCATAGTCAAAATCCCG 1026833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589849794763360