Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3444 82.4 9e-11 >seq3444 Length=1312069 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 1026245 CCTCCTTGATCAACATAACGTGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 1026304 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| || || |||||| || || | || | || || || ||| Sbjct 1026305 TTAGAAGTACCATTTGTCCCACGAATATAGCTCCCTGTTGCACGGATGTTGTGAACTGAG 1026364 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || | |||||||| || Sbjct 1026365 ACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATATG 1026424 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 1026425 CCCTCAATGCTATCATCTTTCAT 1026447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561983983740960