Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq10784 475 1e-129 seq2871 259 1e-64 seq3513 219 1e-52 seq3494 215 2e-51 seq3501 129 2e-25 seq3463 123 7e-24 >seq10784 Length=1928 Score = 475 bits (526), Expect = 1e-129 Identities = 694/976 (71%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1828 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1769 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| | || ||||| || || || Sbjct 1768 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCATTCATTGCTGCTCC 1710 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 1709 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1650 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | || ||||||||||| Sbjct 1649 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 1590 Query 26041 CTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 ||||||||| |||| | | || || ||| ||||||||||||| || ||| |||| ||| Sbjct 1589 CTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAACTAATTG 1531 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||||||| | || ||||| || || | |||||||||| || | Sbjct 1530 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1471 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | || || ||| | || ||||| |||||||||| |||| || | | || ||| || Sbjct 1470 GTCTGGGTATGCGTCCGTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 1411 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| | || || |||| ||||| |||||| |||||| |||||||| || | Sbjct 1410 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1351 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 ||||||||||||| ||||| ||| | |||||||| || || || || || || ||||||| Sbjct 1350 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 1291 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| || || ||||| || ||||| || | || ||| ||||||||| | Sbjct 1290 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1231 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | ||||| ||||| | || ||||| ||||| | | || ||| | | Sbjct 1230 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 1171 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | || || ||||| ||||| || |||||||| || ||||| || || || |||| Sbjct 1170 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 1111 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 | |||| || || || ||||| ||||| || ||| |||||| | |||||||| | | Sbjct 1110 GCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTAG 1051 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 | ||||||| || || || || ||| | || || | ||||| |||| ||||| || | Sbjct 1050 CGGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 991 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 ||||||||||||| || || |||||||| ||||| ||| | | || |||| | Sbjct 990 ACCTAAATGGTTTCAATTTCAACCAGTCTGTAGTTGATAGTCAAGGTCGTGTAATTAACA 931 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||||||| | | ||||| |||||||| || | |||||| || || ||||||| Sbjct 930 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTTGACATGAACGTAATG 871 Query 26760 CTCATAACTTTCCACT 26775 |||| ||||| || || Sbjct 870 CTCACAACTTCCCTCT 855 >seq2871 Length=25858 Score = 259 bits (286), Expect = 1e-64 Identities = 445/644 (69%), Gaps = 9/644 (1%) Strand=Plus/Minus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 |||||||||| || | | || || ||| | |||||||| |||||||||| |||| | Sbjct 14596 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCATGGATTGCTGTTGCATATTCAGCTC 14537 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | ||| ||| | || ||||| | || || |||| ||||| |||||| || Sbjct 14536 C--TATTA-CAGTT------GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTG 14486 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321 |||| |||||||| || |||||| ||| ||| ||||| ||| | ||||||||| | |||| Sbjct 14485 ATGGTATGCCTCTAGGAATCTCTAGTATTTTCAACTTCATGATTGTATTCCAAACTGAAC 14426 Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381 | || || || |||| ||||| || ||| || || ||||| || |||||||| | | Sbjct 14425 ACAACATTCTTGTGCATCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGTGGCTCCC 14366 Query 26382 TTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGG 26441 | ||| ||||||||||| |||| ||||| | || ||||| | ||| Sbjct 14365 TATTCAGCGCTATGCACGGTTCCCTGGTAACTTCTAGTTTGATAAGGGAAACCATAGAAA 14306 Query 26442 AAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCG 26501 | | || ||| | || || | || || ||||| ||||| || |||||||| || | Sbjct 14305 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 14246 Query 26502 CTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTT 26561 ||| || || || ||||| ||| || || || |||| ||||| || ||| | || Sbjct 14245 GTGCTCATGGTTATTTTGGCTTATTGATATTCCAATATGTTAGTTTCAACAACTCTCATT 14186 Query 26562 CTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTA 26621 || | |||||||| | || |||||| || | | || ||| | || || | |||| Sbjct 14185 CTTTACATTTCTTCTTAGCAGCTTGGCTTGTAGAAAGTATCTGGTTCACTACTTTAGGTA 14126 Query 26622 TCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTA 26681 | |||| ||||| || |||||||||| ||| || || ||||||| ||||| ||| | Sbjct 14125 TTAGCACTATGGCTTTCAACCTAAATGATTTGAATTTCAACCAGTTTGTAGTTGATAATT 14066 Query 26682 ATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAG 26741 | || |||| || ||||||||| | | || || | |||||| | | ||| Sbjct 14065 AAGGTCGTGTAATTAACACTTGGGCTGATATTATGAATCGTGATAACCTTGATATGAAAG 14006 Query 26742 TTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGCA 26785 ||||||| || |||||||||| ||||| || || ||| ||||| Sbjct 14005 TTATGCATGACTGTAATGCTCACAACTTCCCTCTAGACCTAGCA 13962 >seq3513 Length=3706331 Score = 219 bits (242), Expect = 1e-52 Identities = 371/529 (70%), Gaps = 9/529 (2%) Strand=Plus/Minus Query 25844 GGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACT 25902 |||||||| || || | ||||| || |||| | | || ||| ||| ||||| | Sbjct 2689311 GGATGGTTTGGTGTT-TGATGATCCCTACCTTATTGACCGCAACTTT-TGTATTTATTAT 2689254 Query 25903 TGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTC 25962 ||| ||||| || || || || |||||||| |||||||| ||| | || |||| || || Sbjct 2689253 TGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGCATTCGTAAACCGATTTCTGGATC 2689194 Query 25963 GTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGG 26022 || | || ||||| ||||| || || | || | | || | ||| || || | Sbjct 2689193 TCTACTTTATGGAAATAATATTATTTCTAGTGCCATTATTCCTACTTCTGCAGCTATAAG 2689134 Query 26023 ACTACATTTTTACCCGATCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCG 26081 | || ||||||||||| |||||||| |||| | | || || ||| |||||||||||| Sbjct 2689133 TTTGCACTTTTACCCGATTTGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCG 2689075 Query 26082 GACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGA--G 26139 || ||| |||| ||| | | ||||||||| | || ||||| || || ||| | Sbjct 2689074 ATCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTA--CATGGATCG 2689017 Query 26140 ACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGC 26199 |||| ||||| || | | || || ||| | || ||||| |||||||||| ||| Sbjct 2689016 TGAGTGAGAACTTAGTTTCCGTCTGGGTATGCGTCCGTGGATTGCTGTTGCATATTTAGC 2688957 Query 26200 ACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAG 26259 || | | || ||| ||| || ||||| | || || |||| ||||| |||||| Sbjct 2688956 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTT 2688897 Query 26260 TGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 26319 |||||| |||||||| || |||||| |||||| ||||| ||| | |||||||| || || Sbjct 2688896 TGATGGTATGCCTCTAGGAATCTCTAATACTTTCAACTTCATGATTGTATTCCAGGCTGA 2688837 Query 26320 ACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTT 26368 || || || || ||||||||||| || ||| || || |||| ||| Sbjct 2688836 GCACAACATTCTTATGCACCCATTTCACATGTTAGGCGTAACTGGTGTT 2688788 >seq3494 Length=2094846 Score = 215 bits (238), Expect = 2e-51 Identities = 310/437 (71%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 26241 TCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 26300 |||| ||||| |||||| |||||| |||||||| || |||||||||||||| ||||| | Sbjct 1053870 TCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCA 1053811 Query 26301 TGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTG 26360 || | |||||| | || || || || || || ||||||||||| || ||| || | | Sbjct 1053810 TGATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGCATAG 1053751 Query 26361 CTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCAC 26420 |||| || |||| ||| | || ||| |||||| || || |||||| ||||| Sbjct 1053750 CTGGTGTATTCGATGGCTCGCTATTCAGTGCTATACATGGTTCTTTGGTAACTTCTAGTT 1053691 Query 26421 TTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATG 26480 | || ||||| | ||| | | || ||| | || || | || || ||||| | Sbjct 1053690 TGATCAGGGAAACCATAGAAAATGAATCTGCTAATGAAGGTTAAAGATTCGGTCAAGAGG 1053631 Query 26481 AAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATG 26540 |||| || |||||||| || |||| || || || ||||| ||| || || || |||| Sbjct 1053630 AAGAAACTTATAATATCGTAGCTGTTCATGGTTATTTTGGCCAATTGATCTTCCAATATG 1053571 Query 26541 CGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCA 26600 | ||||| || ||| |||||| | ||||||| | || ||||||| || || || | Sbjct 1053570 CTAGTTTCAACAACTCTCGTTCTTTATATTTCTTCTTAGCGGCTTGGCCTGTAGTAGGTA 1053511 Query 26601 TATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTA 26660 | ||| | || || | || || ||| ||||| || |||||||||||||| || || | Sbjct 1053510 TCTGGTTAACTGCTTTAGGGATTAACACTATGGCCTTCAACCTAAATGGTTTCAATTTCA 1053451 Query 26661 ACCAGTCAGTAGTAGAT 26677 |||||| ||| | ||| Sbjct 1053450 ACCAGTATGTAATTGAT 1053434 >seq3501 Length=2764102 Score = 129 bits (142), Expect = 2e-25 Identities = 208/297 (70%), Gaps = 9/297 (3%) Strand=Plus/Minus Query 26474 CAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTT 26533 ||||| |||||||| |||||||| || ||| || || || ||||| | || || || Sbjct 1162799 CAAGAGGAAGAGACTTATAATATCGTAATTGCTCATGGTTATTTTGGCCGCTTGATCTTC 1162740 Query 26534 CAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTT 26593 || ||||| | ||| |||||| | ||||||| | | ||||||| || Sbjct 1162739 CAATATGCTAC-------AACTCTCGTTCTTTATATTTCTTCTTAACAGCTTGGCCTGTA 1162687 Query 26594 GTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTT 26653 ||| | || ||| | || || | ||||| |||| || | || ||| |||||||||| Sbjct 1162686 GTTCGTATCTGGTTCACTGCTTTAGGTATTAGCACTATATCTTTCAACTTAAATGGTTTC 1162627 Query 26654 AACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGT 26712 || || ||| |||| ||||| ||| ||||| | | |||| ||| |||| |||| | Sbjct 1162626 AATTTCAACGAGTCTGTAGTTGATAGTTAAGGTTGTG-TAATTAATACGTGGGTTGATAT 1162568 Query 26713 ATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTT 26769 | |||| |||||||| || | ||| ||||||| || ||||||||||| ||||| Sbjct 1162567 TATTAACCATGCTAACCTTGGAATGGAAATTATGCATGAACGTAATGCTCACAACTT 1162511 >seq3463 Length=1425124 Score = 123 bits (136), Expect = 7e-24 Identities = 210/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || ||||| |||||||| || | |||||||| || || | ||||| || |||| Sbjct 46897 ACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 46956 Query 25877 CTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGA 25935 | | || ||| | ||| ||||| | | ||||| | | || || || |||| || Sbjct 46957 TTGACCGCAACTTC-TGTATTTATTATCACATTCATTACTGGTCCTCCATTAAATATTGA 47015 Query 25936 TGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 ||| || ||||| || ||||| | | || | || ||||||||||| || || || || Sbjct 47016 TGGTATTCGTGAACCTGTTTCTGAATATCTACTTTATGGAAACAATATTATTTCTGGTGC 47075 Query 25996 AGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA- 26054 | | || | ||| || || || | || |||||||||||||||||||| |||| Sbjct 47076 CATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGC-GGCAT 47134 Query 26055 CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTA 26113 | | || || ||| ||||||||||||| || ||| |||| ||| | | ||||||||| Sbjct 47135 CCTTTGATGAATGGTTATACAATGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTA 47193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146695448432736