Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq17702 134 1e-26 seq3419 132 4e-26 seq3482 86.0 5e-12 >seq17702 Length=19512 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| |||||||| || || || ||||| || | || ||| |||| |||| ||| Sbjct 11211 TGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCCAGGGTCCTGCCATCCTCCAGCTGC 11152 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| |||||||| ||||| || || || || ||||| ||||| || || || Sbjct 11151 TTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTC 11092 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||||| | || || || ||||||| || || || ||| Sbjct 11091 GCCTTCACATTGTCAATGGTATCAGAGCTCTCTACCTCCAGAGTGATGGTCTTTCCAGTT 11032 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 11031 AGGGTCTTCACAAAAATCTGCATG 11008 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| ||||| |||||||| || | || | |||| || | ||| Sbjct 10527 TGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCCTCGAGCTGC 10468 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | | ||| || || || || ||||||||||| || ||||| || Sbjct 10467 TTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTC 10408 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || || |||||||| | || || |||||||||| || |||||||| Sbjct 10407 GCCTTGACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTG 10348 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | |||||||||||| ||||||||| Sbjct 10347 AGAGTTTTTACAAAGATCTGCATG 10324 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| ||||| |||||||| || | || | |||| || | ||| Sbjct 10755 TGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCGAGCTGC 10696 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||| | | ||| || || || || ||||||||||| || ||||| || Sbjct 10695 TTGCCGGCGAATATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTC 10636 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||||| | || || |||||||||| || |||||||| Sbjct 10635 GCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTG 10576 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 10575 AGGGTCTTGACAAAGATCTGCAT 10553 >seq3419 Length=773737 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | |||||||| || || || || ||||||||||| || Sbjct 377559 CCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCA 377618 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | || || || ||||||||||| | || ||||| || ||| Sbjct 377619 AGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGA 377678 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || ||||| ||| ||| ||| | || | |||||||| |||| ||| Sbjct 377679 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACATTGTCAATTGTGTCAGAACTTTCAACT 377738 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | |||| ||||| ||||| | ||||| || || ||||||||| Sbjct 377739 TCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCATG 377786 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || || |||||||| || | || | |||| |||| || Sbjct 376671 ATGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGTCCATCCTCCAGCTG 376730 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||||||||| ||||| | ||| ||||| || ||||| || ||||| ||||| || || Sbjct 376731 CTTACCTGCAAAGATCAACCTCTGCTGATCAGGAGGAATACCCTCTTTGTCTTGGATCTT 376790 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | || ||||| | || || || ||||| | ||||| || || Sbjct 376791 AGCTTTGACATTATCAATTGTATCAGAACTCTCAACCTCGAGAGTAATGGTTTTTCCTGT 376850 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 376851 CAGCGTCTTCACAAATATCTGCAT 376874 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || || || || ||||| || || | || ||| |||| || Sbjct 377350 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAG-GTCCTGCCATCTTCT 377408 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||||||||| | ||| ||||| || || || || || || || ||| Sbjct 377409 AGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGGATTCCCTCCTTGTCCTGA 377468 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | |||||||| | |||||||| || |||| ||||| Sbjct 377469 ATCTTGGCTTTAACATTATCAATTGTGTCAGAACTCTCCACTTCCAGTGTGATGGTTTTC 377528 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| ||||| || ||||| Sbjct 377529 CCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || ||||| || || ||||| || || | |||||| |||| || Sbjct 381545 ACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCATCTTCA 381604 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||||||| |||||||| || | ||||| || || || || || || || |||||| Sbjct 381605 AGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGTGGGATTCCCTCCTTGTCTTGA 381664 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| | || | || ||||| |||| | ||| | ||| | || || Sbjct 381665 ATTTTGGCCTTAACATTATCAATGGTATCAGAACTTTCAAATTCCAAAGTAATGGTCTTT 381724 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || ||||| || ||||| Sbjct 381725 CCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| ||||| ||||| || ||||| || || | || | |||| || Sbjct 377122 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGACCATCTTCA 377181 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || |||||||| || | | ||| ||||| || || || ||||| |||||||| Sbjct 377182 AGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGG 377241 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||||||| | || | || ||||| | || || || | || | || || Sbjct 377242 ATCTTGGCTTTTACATTGTCAATTGTATCAGAACTCTCGACCTCCAAGGTTATAGTCTTC 377301 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| || |||||||||||||| Sbjct 377302 CCTGTCAGAGTCTTAACAAATATCTGCAT 377330 >seq3482 Length=2130385 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||| || ||||| || || || || |||||||| || | |||| |||| Sbjct 21999 AAGACAAGATGGAGAGTAGACTCGTTCTGAATGTTGTAATCTGCAAGTGTTCGACCATCT 21940 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||||||| || || ||||||||||| | |||||| || || ||||| ||||| || || Sbjct 21939 TCCAATTGTTTCCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCC 21880 Query 101378 TG 101379 || Sbjct 21879 TG 21878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396192606221748