Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3419 95.1 9e-15 seq2991 95.1 9e-15 seq17702 89.7 4e-13 >seq3419 Length=773737 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||| || || ||| ||| || |||||||||||||| | Sbjct 377559 CCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCA 377618 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || | ||| || || |||||||||| | || ||||| | ||| Sbjct 377619 AGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGA 377678 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||||| ||| ||| | | | || || || || Sbjct 377679 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACATTGTCAATTGTGTCAGAACTTTCAACT 377738 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||| ||||| || ||||||||||| Sbjct 377739 TCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCAT 377785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || || ||| || ||||| |||||||||| || | | | || || Sbjct 376893 CACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAAGGTCCTCCCATCCTC 376952 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 |||||||||||| ||||| ||||| | |||||| || | |||| || |||||||| Sbjct 376953 CAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTG 377012 Query 48677 AATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 || ||| || || ||| | | | ||||| || || |||| || || || | Sbjct 377013 GAT-TTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAACTTCCAAGGTGATTGTCT 377071 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || || | ||| || |||||||||||||| Sbjct 377072 TCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 >seq2991 Length=32481 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || || | ||| | || | ||| || || ||| || || ||||| ||||| | Sbjct 26345 CGCCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGG 26286 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | ||| | || || | |||||||||||| || || || ||||| || |||| || Sbjct 26285 CGAGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGG 26226 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| || ||| | | | || || | ||| | Sbjct 26225 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTA 26166 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || || || || |||||||| || || || || ||||||||| Sbjct 26165 CCTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATC 26116 >seq17702 Length=19512 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | || | |||| ||| || ||| || || ||||||||||| |||| Sbjct 10324 GCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 10265 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || || || ||||| |||||||| || | || Sbjct 10264 AAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGG 10205 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || ||||| || |||||| ||| || | | || ||||| ||| || Sbjct 10204 TATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGAC 10145 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || || || || || | |||||| || || || |||||| Sbjct 10144 CTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCATC 10096 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 || || |||| || || | |||| || || || |||||| ||||| ||||| ||| Sbjct 11466 TCACCCCCCCGAAGACGAAGAACCAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAGTCA 11407 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 | || |||| | || ||||||||||| || ||||| |||| || || || || | Sbjct 11406 GCAAGTGTTCGCCCATCTTCCAACTGCTTCCCTGCAAAGATCAACCGTTGCTGGTCTGGT 11347 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 || | || ||||| || |||||| || ||| | | | || || |||| Sbjct 11346 GGGATACCTTCCTTATCCTGAATCTTAGCCTTCACATTGTCTATGGTGTCAGAGCTCTCC 11287 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| | ||||| || || || ||||| || || ||||||||||||||| Sbjct 11286 ACCTCGAGGGTAATGGTCTTGCCTGTCAAGGTCTTCACAAAAATCTGCATC 11236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380855127485772