Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3345 181 2e-40 >seq3345 Length=549657 Score = 181 bits (200), Expect = 2e-40 Identities = 389/576 (68%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| || || ||||| | || | |||||||| || |||||| |||||||| Sbjct 163815 TACAGCAGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAG 163874 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| |||||||||||| | || | || ||| ||||||||||| || ||| || || Sbjct 163875 AAGGTGAGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCC 163934 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| || || || ||||| || ||| | ||| | |||| | | | Sbjct 163935 GAGAAGAAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGC-AAAG--GTCTCC 163991 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 | | ||||||| || ||||| || |||||||| | ||| || || ||||| Sbjct 163992 GAGCCGTCGATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCA 164051 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 | ||| || ||||| | | ||| | | |||| || || || ||| || Sbjct 164052 ACGGCGCGAAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGA 164111 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 ||||||||| ||||| | |||||| || ||||| |||||||| |||||||| | ||| Sbjct 164112 CTGTACATCTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCC 164171 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540 ||| |||||| || || | ||| | ||| ||||||||| || || ||||| Sbjct 164172 TCAGCCACCTGAACATCAGACATGAAAC-GAGAAGCGAGATTCTCAAGTACAATTCCATC 164230 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || || || || |||||||| || | | ||| ||||| |||| || | | | | Sbjct 164231 GGAGGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGT 164290 Query 48601 ATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 ||| |||| | | | || | | ||||| || || || | |||||||| ||||| Sbjct 164291 ATTCTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGC 164350 Query 48658 GAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || || |||||||| |||| || || ||||| Sbjct 164351 CTCCGCCTTCTTGTACATTTCCCAGATCTCTGGATA 164386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931325953141760