Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06]
17,764 sequences; 369,781,828 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq3345 181 2e-40
>seq3345
Length=549657
Score = 181 bits (200), Expect = 2e-40
Identities = 389/576 (68%), Gaps = 8/576 (1%)
Strand=Plus/Plus
Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181
|| |||| || || ||||| | || | |||||||| || |||||| ||||||||
Sbjct 163815 TACAGCAGACACGCGAAGTCGCAATGAAGCCCTTCGTCTCGTGAAATGAGCTCGTTGGAG 163874
Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241
||| |||||||||||| | || | || ||| ||||||||||| || ||| || ||
Sbjct 163875 AAGGTGAGACCAGGCATCAGACCGCGCTTTTTCAGCCAGAAAATCGCGCAGAAGGAACCC 163934
Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301
||||||||||| || || || ||||| || ||| | ||| | |||| | | |
Sbjct 163935 GAGAAGAAGATTCCTTCGACACAAGCGAAGGCCACGAGACGCTCGGC-AAAG--GTCTCC 163991
Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361
| | ||||||| || ||||| || |||||||| | ||| || || |||||
Sbjct 163992 GAGCCGTCGATCCAGCGTAGAGCCCAATCGGCCTTCTTGGCCACGCAAGGGATGGTCTCA 164051
Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421
| ||| || ||||| | | ||| | | |||| || || || ||| ||
Sbjct 164052 ACGGCGCGAAAGAGATGATCCTTCTCGCTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGA 164111
Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481
||||||||| ||||| | |||||| || ||||| |||||||| |||||||| | |||
Sbjct 164112 CTGTACATCTCGGAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCC 164171
Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540
||| |||||| || || | ||| | ||| ||||||||| || || |||||
Sbjct 164172 TCAGCCACCTGAACATCAGACATGAAAC-GAGAAGCGAGATTCTCAAGTACAATTCCATC 164230
Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600
|| || || || || |||||||| || | | ||| ||||| |||| || | | | |
Sbjct 164231 GGAGGCGGCGAAAAATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGT 164290
Query 48601 ATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
||| |||| | | | || | | ||||| || || || | |||||||| |||||
Sbjct 164291 ATTCTCCCAGTCGCGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGC 164350
Query 48658 GAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693
|| || |||||||| |||| || || |||||
Sbjct 164351 CTCCGCCTTCTTGTACATTTCCCAGATCTCTGGATA 164386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931325953141760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |