Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3345 109 1e-18 >seq3345 Length=549657 Score = 109 bits (120), Expect = 1e-18 Identities = 380/578 (66%), Gaps = 20/578 (3%) Strand=Plus/Minus Query 25473 AGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGA 25532 ||| || ||||| |||||||||||||| | || |||||| ||||| ||| |||| Sbjct 164381 AGAGATCTGGGAAATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGGTTGA 164322 Query 25533 TCTGGCCAAGGACATGGACGGCTGG-----TACGCTCTATCCAAAGACGAGCAGCATTTT 25587 || || |||| || || |||| ||| || || | | ||||| | || || Sbjct 164321 CCTCTCCCAGGATATCCGCGACTGGGAGAATAC-CT-TAAACGACGACGAACGCCACTTC 164264 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 ||| |||| | ||||| || || ||||| ||||| || || |||||||| Sbjct 164263 ATCACTCACGTCCTTGCATTTTTCGCCGCCTCCGATGGAATTGTACTTGAGAATCTCGCT 164204 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGAT 25706 | |||| || || ||| | ||||| ||| ||||| || ||||| || Sbjct 164203 TCTCGTTTCATGTCTGATGTTCAGGTGGCTGAGGCTC-GTGCCTTCTATGGGTTCCAAAT 164145 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTAT-GCCAAGCTTCTGATGACGTACATTACAG 25765 || ||||| ||| | ||||| ||| |||| | | | ||||| ||| ||||||| | Sbjct 164144 CGCAATCGAGAATATCCACTCCGAGATGTACAGTCTA-CTTCTCGAGACTTACATTAAGG 164086 Query 25766 ACGTCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || ||| ||||| |||| || ||| | ||| | ||| ||| || || | | | Sbjct 164085 AC-TCGAGCGAGAAGGATCATCTCTTTCGCGCCGTTGAGACCATCCCTTGCGTGGCCAAG 164027 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCT 25883 ||||| ||||| | |||||| || || | ||| || |||| |||||| || Sbjct 164026 AAGGCCGATTGGGCTCTACGCTGGATCGACGGCTCGGAG----ACCTTTGCCGAGCGTCT 163971 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCT 25942 || ||||| ||| ||| || || ||||| ||| ||||| || |||| | || |||| Sbjct 163970 CGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTTCTGCG-CGATTTTCT 163912 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| || || || ||||| || || ||| |||||||||||||| | | Sbjct 163911 GGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTCATTTCACGAG 163852 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||| || || || | || || || || ||||| ||| Sbjct 163851 ACGAAGGGCTTCATTGCGACTTCGCGTGTCTGCTGTAC 163814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928638550012160