Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019719.1 Length=41528 Score E Sequences producing significant alignments: (Bits) Value seq4503 643 3e-180 seq4995 145 2e-30 >seq4503 Length=1033 Score = 643 bits (712), Expect = 3e-180 Identities = 365/371 (98%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 30743 CCCGCTCTTACACATCCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGTGT 30802 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 CCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGTGT 722 Query 30803 ATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATGGTTC 30862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 ATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATGGTTC 782 Query 30863 GTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTTAACAAAATCGCAA 30922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 GTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTTAACAAAATCGCAA 842 Query 30923 TGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGAGTTGATAAGTCGCAGATCAGCAGGT 30982 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 843 TGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCGCAGATCAGCAGGT 902 Query 30983 GGAAGAGGGATTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTTGAATGGGGTGTCG 31042 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 903 GGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTTGAATGGGGGGTCG 962 Query 31043 TTGACGACGACATGGCTCGATTGGCACGACAAGTTGCTTCGATTCTCACCAATAAAAAAC 31102 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 963 TTGACGACGACATGGCTCGATTGGCGCGACAAGTTGCTGCGATTCTCACCAATAAAAAAC 1022 Query 31103 GCCCGGCGGCA 31113 ||||||||||| Sbjct 1023 GCCCGGCGGCA 1033 >seq4995 Length=1147 Score = 145 bits (160), Expect = 2e-30 Identities = 103/119 (87%), Gaps = 7/119 (6%) Strand=Plus/Minus Query 23946 ATTTTGCTGTCTTTGCCTTCCAGCTCAACGCGCAGCCTCCCTACCGTTAGCGCAATTTCC 24005 |||||||||| ||| |||||||| ||||| ||||||| ||||||||||| ||| Sbjct 692 ATTTTGCTGT-------TTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCC 640 Query 24006 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGTTTTCTTTCCAGCTCATCCAGCAG 24064 ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| Sbjct 639 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCAG 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132739992922320