Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq4995 2069 0.0 >seq4995 Length=1147 Score = 2069 bits (2294), Expect = 0.0 Identities = 1147/1147 (100%), Gaps = 0/1147 (0%) Strand=Plus/Minus Query 29524 GTAAAGAAACAGTAAGATAATACTCAACCCGATGTTTGAGTACGGTCATCATCTGACACT 29583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 GTAAAGAAACAGTAAGATAATACTCAACCCGATGTTTGAGTACGGTCATCATCTGACACT 1088 Query 29584 ACAGACTCTGGCATCGCTGTGAAGACGACGCGAAATTCAGCATTTTCACAAGCGTTATCT 29643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 ACAGACTCTGGCATCGCTGTGAAGACGACGCGAAATTCAGCATTTTCACAAGCGTTATCT 1028 Query 29644 TTTACAAAACCGATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAG 29703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1027 TTTACAAAACCGATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAG 968 Query 29704 ATACTCACCTGCATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGAT 29763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 ATACTCACCTGCATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGAT 908 Query 29764 GTCGATAGTTACTAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACC 29823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 GTCGATAGTTACTAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACC 848 Query 29824 AGTGCAGTGCTTGATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCC 29883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 AGTGCAGTGCTTGATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCC 788 Query 29884 GTCTTCACGGACTTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAAC 29943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 787 GTCTTCACGGACTTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAAC 728 Query 29944 ACCTTCGTAATACTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACG 30003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 ACCTTCGTAATACTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACG 668 Query 30004 CAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTG 30063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 CAGTTTCCCTACTGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTG 608 Query 30064 CTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATG 30123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 CTGGTTTCTTTCCCGTTCATCCAGCAGTTCCAGCACAATCGATGGTGTTACCAATTCATG 548 Query 30124 GAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAG 30183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 GAAAAGGTCTGCGTCAAATCCCCAGTCGTCATGCATTGCCTGCTCTGCCGCTTCACGCAG 488 Query 30184 TGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCC 30243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 TGCCTGAGAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCC 428 Query 30244 TCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATC 30303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 TCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATC 368 Query 30304 GGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATT 30363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 GGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATT 308 Query 30364 TTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCC 30423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 TTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCC 248 Query 30424 ATCTTTCATTAATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAA 30483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 247 ATCTTTCATTAATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAA 188 Query 30484 AAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCATCGTTCCTTAAAGACGC 30543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 187 AAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCATCGTTCCTTAAAGACGC 128 Query 30544 CGTTTAACATGCCGATTGCCAGGCTTAAATGAGTCGGTGTGAATCCCATCAGCGTTACCG 30603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 CGTTTAACATGCCGATTGCCAGGCTTAAATGAGTCGGTGTGAATCCCATCAGCGTTACCG 68 Query 30604 TTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACT 30663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 TTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACT 8 Query 30664 GCTGTCT 30670 ||||||| Sbjct 7 GCTGTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150534638394336