Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq4503 1389 0.0 >seq4503 Length=1033 Score = 1389 bits (1540), Expect = 0.0 Identities = 775/778 (99%), Gaps = 0/778 (0%) Strand=Plus/Plus Query 29045 AGCTCAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 29104 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCTTAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 60 Query 29105 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 29164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 120 Query 29165 GGGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCA 29224 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 GGGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCA 180 Query 29225 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTG 29284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTG 240 Query 29285 TCTGCGACAGATTCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATTGCTTTA 29344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTGCGACAGATTCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTA 300 Query 29345 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATAGTTTCTTTTTTGTGCTCATACGT 29404 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGT 360 Query 29405 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 29464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 420 Query 29465 GGCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 29524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 480 Query 29525 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGC 29584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGC 540 Query 29585 GCGATCAACAAGGCCATTCATGCAGGCCGAAAGAtttttttAACTATAAACGCTGATGGA 29644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCGATCAACAAGGCCATTCATGCAGGCCGAAAGATTTTTTTAACTATAAACGCTGATGGA 600 Query 29645 AGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACaaaaaaaCAACAGCATAAATA 29704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACAAAAAAACAACAGCATAAATA 660 Query 29705 ACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGT 29764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGT 720 Query 29765 GTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATG 29822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATG 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128347319741256