Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019768.1 Length=41468 Score E Sequences producing significant alignments: (Bits) Value seq4503 1139 0.0 seq4995 165 2e-36 >seq4503 Length=1033 Score = 1139 bits (1262), Expect = 0.0 Identities = 655/671 (98%), Gaps = 0/671 (0%) Strand=Plus/Plus Query 31022 AGCTCAGGCGAGAACATCCCGGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 31081 |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCTTAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 60 Query 31082 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 31141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 120 Query 31142 GGGCTAAATTCTTCAACGCTAACGTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCA 31201 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 121 GGGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCA 180 Query 31202 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGTCCCATCCCCATCTTG 31261 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTG 240 Query 31262 TCTGCGACAGATTCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATAGCTTTA 31321 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 TCTGCGACAGATTCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTA 300 Query 31322 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGCGCTCATACGT 31381 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 301 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGT 360 Query 31382 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 31441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 420 Query 31442 AGCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 31501 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 480 Query 31502 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGTGTATATCAAAGC 31561 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 481 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGC 540 Query 31562 GCGATCAACAAGGCCATTCATGCAGGCCGAAATAtttttttAACTATAAACGCTGATGGA 31621 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 541 GCGATCAACAAGGCCATTCATGCAGGCCGAAAGATTTTTTTAACTATAAACGCTGATGGA 600 Query 31622 AGCGTTTATGCGGAAGAGGTAAAGCCCTTTCCAAGTAACaaaaaaaCAACTGCATAAGTA 31681 ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| || Sbjct 601 AGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACAAAAAAACAACAGCATAAATA 660 Query 31682 ACACCGCTCTT 31692 || |||||||| Sbjct 661 ACCCCGCTCTT 671 >seq4995 Length=1147 Score = 165 bits (182), Expect = 2e-36 Identities = 107/118 (91%), Gaps = 7/118 (6%) Strand=Plus/Minus Query 24716 ATTTTGCTGTCTTTGCCTTCCAGCTCAACACGCAGTTTCCCTACCGTTAGCGCAATTTCC 24775 |||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 692 ATTTTGCTGT-------TTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCGCAATATCC 640 Query 24776 TCGTTCTCCTGGTCACGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCA 24833 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 639 TCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCATCCAGCA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132548033424240