Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq4503 1377 0.0 >seq4503 Length=1033 Score = 1377 bits (1526), Expect = 0.0 Identities = 772/778 (99%), Gaps = 0/778 (0%) Strand=Plus/Plus Query 27529 AGCTCAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 27588 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCTTAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 60 Query 27589 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 27648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 120 Query 27649 GGGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCA 27708 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 GGGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCA 180 Query 27709 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTG 27768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTG 240 Query 27769 TCTGCGACAGATTCCTGGGGTAAGCCAAGTTCAtttttctttttttCATAAATTGCTTTA 27828 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTGCGACAGATTCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTA 300 Query 27829 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGCGCTCATACGT 27888 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 301 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGT 360 Query 27889 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 27948 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 420 Query 27949 AGCGGTGATAATAGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 28008 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 480 Query 28009 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGC 28068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGC 540 Query 28069 GCGATCAACAAGGCCATTCATGCAGGCCGAAAGAtttttttAACTATAAACGCTGATGGA 28128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCGATCAACAAGGCCATTCATGCAGGCCGAAAGATTTTTTTAACTATAAACGCTGATGGA 600 Query 28129 AGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACaaaaaaaCAACAGCATAAATA 28188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACAAAAAAACAACAGCATAAATA 660 Query 28189 ACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGT 28248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGT 720 Query 28249 GTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATG 28306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATG 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124536923704368