Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3345 109 7e-19 seq3444 102 1e-16 seq3490 93.3 5e-14 >seq3345 Length=549657 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| |||||||| || | || || || ||||| || || ||||||||||| || || | Sbjct 163986 CCTTTGCCGAGCGTCTCGTGGCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCT 163927 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||||| |||| ||| |||| ||||| ||||| ||||| || || |||||| || | Sbjct 163926 TCTGCGCGATTTTCTGGCTGAAAAAGCGCGGTCTGATGCCTGGTCTCACCTTCTCCAACG 163867 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCA 65216 | || ||||| ||||| || || || || Sbjct 163866 AGCTCATTTCACGAGACGAAGGGCTTCA 163839 >seq3444 Length=1312069 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||| ||||| ||||||||||||||| | ||| || | || | Sbjct 1026833 CGGGATTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 1026774 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | || ||| |||||| ||||| | ||| | ||||| | || || Sbjct 1026773 GTTCAAGGGAAGGTTGTTG-AAAGGCCACAGCACATGCTGATGAGAGTCGCTGTTGGAAT 1026715 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| | | || ||||| ||||| | | || ||| | | |||||| ||| | ||| Sbjct 1026714 TCACAAGAATGATATTGAATCTGTTATTAAAACGTACCATATGATGTCTCAACGATGGTT 1026655 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || ||||| ||||||||||| |||||||| || || Sbjct 1026654 CACTCATGCTTCTCCTACCCTGTTCAATGCTGGCACACCAAGGCCTCA 1026607 >seq3490 Length=2069338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || ||||| | | || |||| | || || ||| | || || ||| Sbjct 1569460 CCAGGTACTGGTAAGACATTATTAGCTAGAGCAGTTGCTGGAGAAGCTGGGGTGCCCTTC 1569401 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || |||| || | || |||||| ||||||| || || ||||| || || Sbjct 1569400 TTCTCTTGTGCTGCATCAGAGTTCGTGGAGTTGTTTGTGGGAGTTGGTGCTTCCAGAGTG 1569341 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | || || | ||| ||| ||| || ||||| || |||||||||||| Sbjct 1569340 AGAGATTTGTTCGAGAAAGCCAAATCAAAGGCACCCTGCATTGTGTTTATTGATGAGATT 1569281 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTG--GTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| ||||| | ||| | | |||||| | | | || ||||| |||||||| | Sbjct 1569280 GATGCAGTGGGAAGGCAGAGAGGAGCTGGTCTCGGAGG--AGGGAATGATGAGAGAGAGC 1569223 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || |||||||| || | || ||||||||||| || Sbjct 1569222 AGACTATTAATCAGCTCTTGACTGAGATGGATGGATT 1569186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596437131720320