Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq10784 475 1e-129 seq2871 259 1e-64 seq3513 219 1e-52 seq3494 215 2e-51 seq3501 129 2e-25 seq3463 123 7e-24 >seq10784 Length=1928 Score = 475 bits (526), Expect = 1e-129 Identities = 694/976 (71%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 25886 AGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTT 25945 || || ||||| ||||||||||| || || |||||| | || |||||||| ||||| Sbjct 855 AGAGGGAAGTTGTGAGCATTACGTTCATGTCAAACTTCCATACCAAGGTTAGCACGGTTA 914 Query 25946 AATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAG 26005 | | ||||||||| || |||| || | | ||| ||||| |||||||| || Sbjct 915 ATAATATCAGCCCAAGTGTTAATTACACGACCTTGACTATCAACTACAGACTGGTTGAAA 974 Query 26006 TTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCA 26065 || |||||||||||||| || ||||| |||| ||||| | || || | ||| || || Sbjct 975 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATACCT 1034 Query 26066 ACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATAC 26125 || || ||||||| || | |||||||| | |||||| ||| || ||||| ||||| Sbjct 1035 ACTACAGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATAT 1094 Query 26126 TGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCT 26185 || || || |||| ||||| || || || ||||| || |||||||| || ||||| ||| Sbjct 1095 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCT 1154 Query 26186 TGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAG 26245 || || || | || || | ||| || | | ||||| ||||| || | Sbjct 1155 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 1214 Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 ||||| ||||| || ||||||||| ||| || | || ||||| || ||||| || Sbjct 1215 GAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACG 1274 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||||||||| || || || || || || |||||||| | ||| ||| Sbjct 1275 CCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATGAAG 1334 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || |||||||||||||| || |||||||| |||||| |||||| ||||| |||| || Sbjct 1335 TTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG 1394 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | ||||| || ||| ||| || | | || |||| |||||||||| ||||| Sbjct 1395 TAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAC 1454 Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCT 26545 || | ||| || || | | || |||||||||| | || || ||||| || Sbjct 1455 GGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 1514 Query 26546 ATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCA-G 26604 | ||||||||| | | ||| |||| ||| || ||||||||||||| ||| || || | | Sbjct 1515 AGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCATTGTATAACCATTCATCAACG 1574 Query 26605 TGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGAC 26664 |||| |||||||||||||||||||| || | || || || ||| | || | | Sbjct 1575 GATGCC-GCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAAT 1633 Query 26665 TGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCC 26724 || || || || ||||||||||| || | || || || ||||| || ||||| || || Sbjct 1634 GGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 1693 Query 26725 ATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGA 26783 ||| |||||||| || || || || ||||| || | ||||| ||| | ||| || | | Sbjct 1694 ATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAATACA-GAAGTTGCGGTCA 1752 Query 26784 GTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTG 26843 |||| || ||||| | || || |||||||| | || |||||||| ||||| || | Sbjct 1753 ATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGG 1812 Query 26844 TAACCCACTCACAAAA 26859 | | ||| | ||| || Sbjct 1813 TTATCCAGTTACAGAA 1828 >seq2871 Length=25858 Score = 259 bits (286), Expect = 1e-64 Identities = 445/644 (69%), Gaps = 9/644 (1%) Strand=Plus/Plus Query 25876 TGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTT 25935 ||||| ||| || || ||||| |||||||||| || |||||||||| | | ||||| Sbjct 13962 TGCTAGGTCTAGAGGGAAGTTGTGAGCATTACAGTCATGCATAACTTTCATATCAAGGTT 14021 Query 25936 AGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGA 25995 | | || || | | ||||||||| || |||| || | | ||| ||||| | Sbjct 14022 ATCACGATTCATAATATCAGCCCAAGTGTTAATTACACGACCTTAATTATCAACTACAAA 14081 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 |||||| || || ||| |||||||||| || ||||| |||| ||||| | || || | Sbjct 14082 CTGGTTGAAATTCAAATCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTAGTGAA 14141 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || | | || |||||| || | |||||||| | |||| | ||| || || Sbjct 14142 CCAGATACTTTCTACAAGCCAAGCTGCTAAGAAGAAATGTAAAGAATGAGAGTTGTTGAA 14201 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| |||| || || || ||| ||||| || || || ||| | || |||||||| || Sbjct 14202 ACTAACATATTGGAATATCAATAAGCCAAAATAACCATGAGCACCTACGATATTATAAGT 14261 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| || || | || || | ||| || | | ||| | ||||| Sbjct 14262 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTATGGTTTCCCT 14321 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | ||||| |||| ||||||||||| ||| || | |||||||| || Sbjct 14322 TATCAAACTAGAAGTTACCAGGGAACCGTGCATAGCGCTGAATAGGGAGCCACCGAATAC 14381 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| || || ||| || ||||| |||| || || || ||||| | ||||||||| Sbjct 14382 ACCAGCTACGCCTAACATGTGAAATGGATGCACAAGAATGTTGTGTTCAGTTTGGAATAC 14441 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||| ||||| ||| ||| |||||| || |||||||| |||||| |||||| ||||| Sbjct 14442 AATCATGAAGTTGAAAATACTAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 14501 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 |||| || || | ||||| || | ||| ||| || |||| ||||||||| Sbjct 14502 ACCGATTGGGTAGATCAAGAAAAC------AACTG-TAATA--GGAGCTGAATATGCAAC 14552 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519 | |||||||| | ||| || || | | || |||||||||| Sbjct 14553 AGCAATCCATGGGCGCATACCCAGACGGAAACTAAGTTCCCACT 14596 >seq3513 Length=3706331 Score = 219 bits (242), Expect = 1e-52 Identities = 371/529 (70%), Gaps = 9/529 (2%) Strand=Plus/Plus Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 ||| |||| || || ||| || ||||||||||| || || || || || || ||||| Sbjct 2688788 AACACCAGTTACGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAA 2688847 Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412 ||| | ||| ||||| |||||| |||||| || |||||||| |||||| |||||| || Sbjct 2688848 TACAATCATGAAGTTGAAAGTATTAGAGATTCCTAGAGGCATACCATCAAAAAAACTTCC 2688907 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGC 26472 ||| |||| || || | ||||| || ||| ||| || | | || ||| |||||| Sbjct 2688908 TTGACCGATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTAAATATGC 2688967 Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTC--TCCCTGCA 26530 |||| ||||| || | ||| || || | | || ||||| |||| | ||| || Sbjct 2688968 AACAGCAATCCACGGACGCATACCCAGACGGAAACTAAGTTCTCACTCACGATCCATG-- 2689025 Query 26531 TATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 || ||||| || | ||||||||| | | ||| |||| ||| || ||||||||||| Sbjct 2689026 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCATTGTAT 2689085 Query 26591 AGCCACTCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTT 26649 | ||| || || | | |||| |||||||| ||||||||||| || | | || || Sbjct 2689086 AACCATTCATCAACGGATGCC-GCTTCCCAAATCGGGTAAAAGTGCAAACTTATAGCTGC 2689144 Query 26650 AGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAAC 26709 ||| | || | | || | || || ||||| ||||| || | || || || |||| Sbjct 2689145 AGAAGTAGGAATAATGGCACTAGAAATAATATTATTTCCATAAAGTAGAGATCCAGAAAT 2689204 Query 26710 TGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-AC 26768 || | ||| |||||||| |||||||| || || || || ||||| |||| ||||| || Sbjct 2689205 CGGTTTACGAATGCCATCAATATCTACTGGAGGAGCAGCAATGAATGCAATAATAAATAC 2689264 Query 26769 ATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCC 26817 | ||| || | | |||| || ||||| | || || |||||||| Sbjct 2689265 A-AAAGTTGCGGTCAATAAGGTAGGGATCATCA-AACACCAAACCATCC 2689311 >seq3494 Length=2094846 Score = 215 bits (238), Expect = 2e-51 Identities = 310/437 (71%), Gaps = 0/437 (0%) Strand=Plus/Plus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| | ||| ||||||| || || |||||||||||||| || ||||| ||| || || Sbjct 1053434 ATCAATTACATACTGGTTGAAATTGAAACCATTTAGGTTGAAGGCCATAGTGTTAATCCC 1053493 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | ||| || || || || ||||||| || | ||||||| | |||||| Sbjct 1053494 TAAAGCAGTTAACCAGATACCTACTACAGGCCAAGCCGCTAAGAAGAAATATAAAGAACG 1053553 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGAC 26163 ||| || ||||| ||||| || || || ||| ||||| || || || |||| || Sbjct 1053554 AGAGTTGTTGAAACTAGCATATTGGAAGATCAATTGGCCAAAATAACCATGAACAGCTAC 1053613 Query 26164 AATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTC 26223 |||||||| || ||||| ||||| || || | || || | ||| || | | || Sbjct 1053614 GATATTATAAGTTTCTTCCTCTTGACCGAATCTTTAACCTTCATTAGCAGATTCATTTTC 1053673 Query 26224 TGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGC 26283 | | ||||| || | ||||| |||||| || || |||||| ||| || | Sbjct 1053674 TATGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGTATAGCACTGAATAGCGA 1053733 Query 26284 TCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTC 26343 ||| |||| || ||||| | || ||| || ||||||||||| || || || || || Sbjct 1053734 GCCATCGAATACACCAGCTATGCCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 1053793 Query 26344 TGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACT 26403 || | |||||| | ||| ||||| |||||||||||||| || |||||||| |||||| Sbjct 1053794 AGCCTAGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 1053853 Query 26404 AAAACTCCCTTGTCCGA 26420 |||||| ||||| |||| Sbjct 1053854 AAAACTTCCTTGACCGA 1053870 >seq3501 Length=2764102 Score = 129 bits (142), Expect = 2e-25 Identities = 208/297 (70%), Gaps = 9/297 (3%) Strand=Plus/Plus Query 25892 AAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACA 25951 ||||| ||||||||||| || ||||||| ||| | || |||||||| |||| | | | Sbjct 1162511 AAGTTGTGAGCATTACGTTCATGCATAATTTCCATTCCAAGGTTAGCATGGTTAATAATA 1162570 Query 25952 TCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGACTGGTTAAAGTTAAA 26010 ||| |||| ||| |||| | | ||||| ||| ||||| |||| ||| || || || Sbjct 1162571 TCAACCCACGTATTAATTA-CACAACCTTAACTATCAACTACAGACTCGTTGAAATTGAA 1162629 Query 26011 ACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAAC 26070 |||||||| ||| || | || |||| ||||| | || || | ||| || | ||| || Sbjct 1162630 ACCATTTAAGTTGAAAGATATAGTGCTAATACCTAAAGCAGTGAACCAGATACGAACTAC 1162689 Query 26071 CGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAA 26130 ||||||| | | ||||||| | |||||| ||| | ||||| || || Sbjct 1162690 AGGCCAAGCTGTTAAGAAGAAATATAAAGAACGAGAGTT-------GTAGCATATTGGAA 1162742 Query 26131 AATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTG 26187 || || | ||||| || || || ||| || |||||||| |||||||| ||||| Sbjct 1162743 GATCAAGCGGCCAAAATAACCATGAGCAATTACGATATTATAAGTCTCTTCCTCTTG 1162799 >seq3463 Length=1425124 Score = 123 bits (136), Expect = 7e-24 Identities = 210/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 26548 TAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG- 26606 ||||||||| | | ||| |||| ||| || ||||||||||||| ||| || || | | Sbjct 47193 TAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCATTGTATAACCATTCATCAAAGGA 47134 Query 26607 TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTG 26666 |||| |||||||||||||||||||| || | || || || ||| | || | | | Sbjct 47133 TGCC-GCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGG 47075 Query 26667 CTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCAT 26726 | || || || ||||||||||| || | || | | ||||| || ||||| || |||| Sbjct 47074 CACCAGAAATAATATTGTTTCCATAAAGTAGATATTCAGAAACAGGTTCACGAATACCAT 47015 Query 26727 CTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGT 26785 | |||| || || || | | ||||| | | ||||| ||| | ||| || | | | Sbjct 47014 CAATATTTAATGGAGGACCAGTAATGAATGTGATAATAAATACA-GAAGTTGCGGTCAAT 46956 Query 26786 AAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 ||| || ||||| | || || |||||||| | || |||||||| ||||| || || Sbjct 46955 AAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGT 46897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147680840522880