Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq17702 136 7e-27 seq3419 120 5e-22 seq2991 100 5e-16 >seq17702 Length=19512 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| |||| ||||| || | || | || | |||||| || |||||||| Sbjct 11010 ATGCCACCCCTCAGGCGAAGAACTAAGTGGAGGGTTGACTCTTTCTGTATGTTATAGTCA 10951 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || | | ||| || | ||||| ||||||||||| | ||||||||||||||| Sbjct 10950 GCTAAGGTGCGACCATCCTCAAGCTGTTTCCCGGCAAAAATGAGCCTCTGTTGATCAGGA 10891 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || ||||| || |||| ||| || || || ||| |||| Sbjct 10890 GGGATGCCTTCCTTATCCTGGATTTTCGTCTTTACATTGTCTATTGTGTCAGAACTCTCA 10831 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || ||||| || || || || ||||| || ||||| Sbjct 10830 ACCTCCAGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 10781 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||||||||| |||||||| | || | || || |||||| ||||| Sbjct 10326 ATGCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCA 10267 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | || || | || || || || || || | | |||||| |||||| Sbjct 10266 GCAAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGA 10207 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 ||||| ||||| |||||||| || || | ||| | || |||||| || ||| ||| Sbjct 10206 GGTATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCG 10147 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| || || |||||||| Sbjct 10146 ACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| || || || | || | |||||| || || || || Sbjct 10554 ATACCACCTCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCA 10495 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | || || ||||| || || | ||||| || |||||| Sbjct 10494 GCAAGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGA 10435 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| || || || || | || | || || || || || |||| Sbjct 10434 GGGATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTTATCAACGGTGTCAGAGCTCTCA 10375 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || ||||||||||| || ||||| Sbjct 10374 ACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 10325 >seq3419 Length=773737 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| | |||||| | | ||| || || ||||||| || | ||| || || || | Sbjct 376640 TTTAAAAACCACCACGAAGTCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGT 376699 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || | | || | ||| || | || || || ||||| || || ||||| |||| Sbjct 376700 AATCTGCCAGGGTACGTCCATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGAT 376759 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 ||||||| || || ||||| ||||| || || | ||| | ||| ||| ||||| ||| Sbjct 376760 CAGGAGGAATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAAC 376819 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || ||||| || ||||| ||||| ||||| || |||||||| |||||| Sbjct 376820 TCTCAACCTCGAGAGTAATGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCATT 376875 Score = 102 bits (112), Expect = 1e-16 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| || | ||||| ||||| || | || | ||| || |||||| Sbjct 377550 ATTTGCATACCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTG 377609 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | || | | ||| || | ||||| || ||||| || || || || ||| Sbjct 377610 TAATCTGCAAGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGA 377669 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || || || || | ||| | ||| ||| || || ||| Sbjct 377670 TCTGGTGGAATACCTTCCTTGTCCTGAATCTTTGCTTTGACATTGTCAATTGTGTCAGAA 377729 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | || ||||||||||| || || ||||| || || || ||||| Sbjct 377730 CTTTCAACTTCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCAT 377785 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| || | ||||| || || ||||||||||| | | ||||| | Sbjct 381311 CGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCTGCAAGGGTTCTTCCA 381370 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | || ||||| || || || || || || || Sbjct 381371 TCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGGGATACCCTCCTTG 381430 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | ||| ||||||||| ||| ||||||||| | ||| || Sbjct 381431 TCCTGGATTTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCAACTTCCAAAGTGATG 381490 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || |||||||| Sbjct 381491 GTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525 >seq2991 Length=32481 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||| ||||| || ||||||| ||| | ||| || |||||||| |||| Sbjct 26343 CCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCG 26284 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | | ||| || | || || ||||| || || | | ||| || || || || Sbjct 26283 AGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 26224 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || || || || |||| || | ||| || ||||| || ||||| || Sbjct 26223 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCTACC 26164 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || ||||| || | || || || || || ||||| || Sbjct 26163 TCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATCTT 26114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899454631740480