Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3419 100 4e-16 seq17702 87.8 3e-12 >seq3419 Length=773737 Score = 100 bits (110), Expect = 4e-16 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || | ||||| ||||| || || || ||||| || |||| Sbjct 381525 ATGCAAATTTTCGTTAAGACTCTTACTGGGAAAACCATCACTTTGGAAGTTGAGAGTTCT 381466 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| || || || || || || || ||||| ||| Sbjct 381465 GATACTATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAA 381406 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| ||||||||||| || ||| ||||| | |||| |||| Sbjct 381405 CAAAGGCTCATATTTGCTGGTAAGCAGCTTGAGGATGGAAGAACCCTTGCAGACTATA-- 381348 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 381347 ATATCCAAA 381339 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| |||||| | || || |||| |||||||| ||||| | || || || ||| Sbjct 376875 AATGCAGATATTTGTGAAGACGCTGACAGGAAAAACCATTACTCTCGAGGTTGAGAGTTC 376816 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || ||| ||| || ||||| ||||| || || ||||| || || Sbjct 376815 TGATACAATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGATCA 376756 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| ||||||||||| || ||| Sbjct 376755 GCAGAGGTTGATCTTTGCAGGTAAGCAGCTGGAGGAT 376719 >seq17702 Length=19512 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || | || || || ||| Sbjct 11009 ATGCAGATTTTTGTGAAGACCCTAACTGGAAAGACCATCACTCTGGAGGTAGAGAGCTCT 11068 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || ||||| ||||| || || ||||| ||| Sbjct 11069 GATACCATTGACAATGTGAAGGCGAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAA 11128 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| ||||||||||| || ||| ||| || | | |||||||| Sbjct 11129 CAACGTTTGATCTTTGCAGGTAAGCAGCTGGAGGATGGCAGGACCCTGGCGGATTATAAC 11188 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 11189 ATCCAGAAAGAATCCACCCTTCA 11211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731709487822400