Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3419 123 5e-23 seq17702 118 2e-21 seq3482 89.7 1e-12 seq3447 84.2 4e-11 >seq3419 Length=773737 Score = 123 bits (136), Expect = 5e-23 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATA 192357 ||||||| || ||||| | ||| || | || | ||| | || | ||| || ||| Sbjct 376638 AGTTTAAAAA--CCACCACGAAGTCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATG 376695 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || ||||| | | || ||| |||| |||| || ||||| |||||||| || ||||| Sbjct 376696 TTGTAATCTGCCAGGGTACGTCCATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGC 376755 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 |||||||| || || || ||||| ||||| || ||| ||| |||||| || | ||| Sbjct 376756 TGATCAGGAGGAATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCA 376815 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || |||||||||||||| || || | || || | ||||||||||||| Sbjct 376816 GAACTCTCAACCTCGAGAGTAATGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCATT 376875 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | || || | || || |||| || | |||||| ||| || || ||| Sbjct 381524 ATACCACCACGGAGTCGAAGCACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCA 381583 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | ||| ||||||||||| ||||| || ||||| || ||| Sbjct 381584 GCAAGAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGT 381643 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| ||||| || |||||| || | ||| || ||| Sbjct 381644 GGGATTCCCTCCTTGTCTTGAATTTTGGCCTTAACATTATCAATGGTATCAGAACTTTCA 381703 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| | ||||||||| || ||||| | || || | ||| || ||||| Sbjct 381704 AATTCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | ||| | ||| || || || ||||||| ||| || | |||| ||| Sbjct 376894 ACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAAGGTCCTCCCATCCTCC 376953 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || | |||||||| || ||||| || ||||| || ||||| Sbjct 376954 AACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGG 377013 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 |||||| | || ||||| || | |||||| ||| ||||| | || || || || Sbjct 377014 ATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAACTTCCAAGGTGATTGTCTTC 377073 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || | ||| |||||||| Sbjct 377074 CCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | || || || | |||| || || ||||||||| || Sbjct 381296 ATGCCACCACGAAGACGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCT 381355 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | |||| | |||| || | || ||||||||||| || | || ||||| || ||| Sbjct 381356 GCAAGGGTTCTTCCATCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGT 381415 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| || ||||| |||| ||| || || Sbjct 381416 GGGATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCA 381475 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| ||||| | || |||| || || ||||| Sbjct 381476 ACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||||| || |||||||| | ||||| ||||| ||||| |||||||| | Sbjct 377174 CATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGGATTCCTTCCT 377233 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || || ||||||||| || | ||| || || || || | || | Sbjct 377234 TATCTTGGATCTTGGCTTTTACATTGTCAATTGTATCAGAACTCTCGACCTCCAAGGTTA 377293 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || || | || |||| |||||||||||| Sbjct 377294 TAGTCTTCCCTGTCAGAGTCTTAACAAATATCTGCAT 377330 >seq17702 Length=19512 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | ||||| || | || | |||||| || ||||| ||| Sbjct 11010 ATGCCACCCCTCAGGCGAAGAACTAAGTGGAGGGTTGACTCTTTCTGTATGTTATAGTCA 10951 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| || || |||| || | ||||| || ||||| || | |||||||||||||| Sbjct 10950 GCTAAGGTGCGACCATCCTCAAGCTGTTTCCCGGCAAAAATGAGCCTCTGTTGATCAGGA 10891 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || ||||| | |||||||| ||| | || || || Sbjct 10890 GGGATGCCTTCCTTATCCTGGATTTTCGTCTTTACATTGTCTATTGTGTCAGAACTCTCA 10831 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| |||||||| | || || | ||| |||||||| Sbjct 10830 ACCTCCAGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 10781 >seq3482 Length=2130385 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || | ||| | ||||| ||| || || || ||||| | | |||||| |||| Sbjct 21999 AAGACAAGATGGAGAGTAGACTCGTTCTGAATGTTGTAATCTGCAAGTGTTCGACCATCT 21940 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||||||||| |||||||| || || |||||||| ||||| || |||||||| || || Sbjct 21939 TCCAATTGTTTCCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCC 21880 Query 192445 TGTA 192448 |||| Sbjct 21879 TGTA 21876 >seq3447 Length=1078458 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || | | || || | || || | |||||| || || || || | | Sbjct 808073 GATGTTATAGTCCGCGAGCGTGCGGCCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCG 808132 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| ||||| || ||||| || || || | || ||||| || | Sbjct 808133 CTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTCGTCTTCACATTGTCGATCGT 808192 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || ||||| || ||||| || || |||| ||||| | |||||||| Sbjct 808193 ATCCGATGACTCAACCTCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTG 808252 Query 192534 CATTTT 192539 |||||| Sbjct 808253 CATTTT 808258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984255931121400