Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3419 113 8e-20 seq3447 104 4e-17 seq3482 89.7 9e-13 seq17702 86.0 1e-11 >seq3419 Length=773737 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | ||| | || ||||| | ||| | ||| || ||| || ||||| Sbjct 376873 ATTCCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCA 376932 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | | | || ||||| || |||||||||||||| | ||||||||||| ||| Sbjct 376933 GCTAAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGT 376992 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| | || ||||| || |||||||| ||| Sbjct 376993 GGAATCCCTTCCTTGTCTTGGATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCA 377052 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || || ||||| | || || | || |||||||| Sbjct 377053 ACTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||||| | || || |||| || | |||||| || || || || Sbjct 381524 ATACCACCACGGAGTCGAAGCACCAAGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCA 381583 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | | || || | ||| ||||||||||| ||||| || |||||||| ||| Sbjct 381584 GCAAGAGTTCTTCCATCTTCAAGTTGCTTACCAGCAAATATTAACCTTTGTTGGTCCGGT 381643 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| ||||| || |||||| || ||||| || ||| Sbjct 381644 GGGATTCCCTCCTTGTCTTGAATTTTGGCCTTAACATTATCAATGGTATCAGAACTTTCA 381703 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| | ||||||||| || ||||| | || || | || || ||||| Sbjct 381704 AATTCCAAAGTAATGGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 381753 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | |||||| | || | ||| | || | ||| || || || ||||| Sbjct 376644 AAAACCACCACGAAGTCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATC 376703 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | | ||| | || |||| || ||||| ||||| || || ||||| || ||||| Sbjct 376704 TGCCAGGGTACGTCCATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCAGG 376763 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || ||||| ||||| || ||| ||| |||||| || ||||| || || Sbjct 376764 AGGAATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAACTCTC 376823 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || |||||||||||||| || || | || || | |||||||||||| Sbjct 376824 AACCTCGAGAGTAATGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCATT 376875 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | |||| || || |||||||| ||| Sbjct 381296 ATGCCACCACGAAGACGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCT 381355 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | | || || | || ||||||||||| || | || |||||||| ||| Sbjct 381356 GCAAGGGTTCTTCCATCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGT 381415 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| || ||||| |||||||| || || Sbjct 381416 GGGATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCA 381475 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| ||||| | || |||| ||| || ||||| Sbjct 381476 ACTTCCAAAGTGATGGTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||||||||| |||||||| ||||| || || ||||| || ||||| || || Sbjct 377868 TGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGGGATTCCCTCCTTATCCTGAATC 377927 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || |||||| ||||| || || || || || || || | ||| || ||| Sbjct 377928 TTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCGAGGGTGACGGTCTTGCCA 377987 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | |||||| | || || ||||| Sbjct 377988 GTAAGTGTTTTCACAAAGATTTGCAT 378013 >seq3447 Length=1078458 Score = 104 bits (114), Expect = 4e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||| || || ||||| | | ||| ||||| ||||| ||||| || | Sbjct 808099 CGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGGATTCCCTCCT 808158 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 |||| || || || | || ||||| || ||||| || || || || ||||| || | Sbjct 808159 TATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACCTCTAGGGTTA 808218 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || || |||| ||||| | ||||||||||||||| Sbjct 808219 TGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCATTTT 808258 >seq3482 Length=2130385 Score = 89.7 bits (98), Expect = 9e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 || || | ||| | ||||| ||| || ||| || ||||||| | | ||| | || Sbjct 21999 AAGACAAGATGGAGAGTAGACTCGTTCTGAATGTTGTAATCTGCAAGTGTTCGACCATCT 21940 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 ||||||||||| |||||||| || || |||||||||||||| || |||||||| || || Sbjct 21939 TCCAATTGTTTCCCAGCAAATATCAACCTCTGTTGGTCAGGAGGAATTCCTTCCTTGTCC 21880 Query 171978 TGTA 171981 |||| Sbjct 21879 TGTA 21876 >seq17702 Length=19512 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || | ||| | || | ||| | ||| | || || |||||| || || Sbjct 10326 ATGCCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCA 10267 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| |||| || || || || || || | | |||||||||||| Sbjct 10266 GCAAGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGA 10207 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| ||||| |||||||| || || ||| || || ||||| ||||| || Sbjct 10206 GGTATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCG 10147 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || | ||||| | ||| || ||||| Sbjct 10146 ACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904935014551200