Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3435 154 4e-32 seq3376 120 9e-22 seq3444 89.7 2e-12 >seq3435 Length=873550 Score = 154 bits (170), Expect = 4e-32 Identities = 283/407 (70%), Gaps = 7/407 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| | | || |||||||||||| ||| | ||||||||| | ||| Sbjct 566082 AAAACCATCCATTTCTACCAGAAGTTGATTAAGTGTGCTTTCGCGTTCATCATTGGCACC 566023 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | ||| | || | | |||| | ||||| ||||||||||| ||||| || || Sbjct 566022 TGA-GAAGCCTCC--ACGCCCCCTTGCTCGACCAATTGCATCAATTTCATCAATAAATAT 565966 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | || |||| | ||| || || | ||| || | ||| || | |||| ||||| Sbjct 565965 TATACTAGGAGCACATTGCCTTGCTTCTTGAAACAAGTTTCTCACCCTAGATGGTCCAAC 565906 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||||||| ||||||| | || || ||| | || | | || | |||| ||| | || Sbjct 565905 ACCAACAAACATTTCCATGAAATCCGAACCAGAAA-TAGATAAAAATGGCACAGCCGATT 565847 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | ||||| ||| | |||||||| ||||| |||||||| || || || |||| ||| Sbjct 565846 CCCCTGCAGTTGCTTTTGCCAGAAGGGTCTTTCCTGTTCCCGGAGGGCCAACTAAAAGAG 565787 Query 289238 CTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | || ||||| | |||||| |||||| || |||||||| || |||| || || | Sbjct 565786 CACCTTTTGGAATTTTTGCTCCCAGCTC-CTCATATTTCTTTGGATTCTTCAAGAAGTGC 565728 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | |||||||||||||| || |||||||| Sbjct 565727 ACAAACTCCATAATTTCTTGCTTTGCCTCATCACAGCCAGCTACATC 565681 >seq3376 Length=828544 Score = 120 bits (132), Expect = 9e-22 Identities = 279/415 (67%), Gaps = 7/415 (2%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||||||||||||| |||| | || || |||||||| ||||| ||||||||| | Sbjct 693924 TAAATCCATCCATCTCAGTTAGCAACTGGTTTAGTGTTTGCTCCCTCTCATCATTTCCTC 693865 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | ||| || | || ||| | || || |||||||| ||||| || || || | Sbjct 693864 CGCC--AATT-CCTG--TCCCTCTCTGCCTT-CCTACAGCATCGATTTCATCGATAAACA 693811 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | ||| || ||||| | |||| | |||| || || || | ||||| |||| Sbjct 693810 CTAAACATGGCGAATTAGCTTTCGCCTTGTTGAATAGATCCCTAACTCTTGATGCCCCAA 693751 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 ||| ||| |||| |||| || || || | || | || ||| | ||| || | Sbjct 693750 CACCTACAAACATCTCTATGAACTCTGATCCTGACAAAGAAAAGAAAGGGACACCAGCCT 693691 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | ||||| | |||| | || ||||||||||| || ||||| ||||| || ||| |||| Sbjct 693690 CTCCTGCAATTGCCTTTGCAAGAAGTGTCTTTCCAGTTCCTGGTGGCCCAACTAGAAGAA 693631 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 |||| ||||| | | | || ||| | | | | || || || | | || || || | Sbjct 693630 CTCCTTTTGG-ATTCTAGCGCCAACTGCTGCAAACTTTTCCGGTGTTCTCAAGAACTCAA 693572 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| |||| || || | ||||||||| || ||| ||||||||| ||| || Sbjct 693571 CAATCTCCTGAAAGTCCTCTTTTGCCTCCTCTACTCCAGCTACATCATTAAATGT 693517 >seq3444 Length=1312069 Score = 89.7 bits (98), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 156045 AAAC-TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| ||||||||| || || ||||| ||||| || ||||| | |||||| || Sbjct 1026223 AAACATACCCTTCCTCTTGCCTCCTCCTTGATCAACATAACGTGCAGTATCATTGAATAC 1026282 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | ||||| |||| ||||||||| ||||| ||||| || || ||||||| Sbjct 1026283 CCGCAGCATTGGAACAATACCATTAGAAGTACCATTTGTCCCACGAATAT 1026332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471482612474468