Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3345 158 1e-32 seq3496 93.3 5e-13 >seq3345 Length=549657 Score = 158 bits (174), Expect = 1e-32 Identities = 186/251 (74%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||| ||||| ||||| || || ||||| | |||| ||||| || Sbjct 164124 GAGTGGATATTCTCGATTGCGATTTGGAACCCATAGAAGGCACGAGCCTCAGCCACCTGA 164183 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| || || || ||||| || || || ||| |||||||||| Sbjct 164184 ACATCAGACATGAAACGAGAAGCGAGATTCTCAAGTACAATTCCATCGGAGGCGGCGAAA 164243 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| |||| |||||||| ||||||||| | | | | |||||| | Sbjct 164244 AATGCAAGGACGTGAGTGATGAAGTGGCGTTCGTCGTCGTTTAAGGTATTCTCCCAGTCG 164303 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | | || | |||||| ||||||||||| ||||||| ||| ||||| ||||| ||| Sbjct 164304 CGGATATCCTGGGAGAGGTCAACCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTG 164363 Query 869870 TACATCTCCCA 869880 ||||| ||||| Sbjct 164364 TACATTTCCCA 164374 Score = 123 bits (136), Expect = 3e-22 Identities = 186/265 (70%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || || | |||||| |||| ||| || ||||| || |||||||| Sbjct 163845 CCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCGCGCTTT 163904 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || || |||||||| |||||||| ||||| || ||||| || ||| Sbjct 163905 TTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACAAGCGAAG 163964 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | ||| |||||||||||||| || ||| || |||||| | ||||| Sbjct 163965 GCCACGAGACGCTCGGCAAAGGTCTCCGAGCC------GTCGATCCAGCGTAGAGCCCAA 164018 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| || ||| | || | || || | |||||||||||| || ||||| ||| Sbjct 164019 TCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACGGCGCGAAAGAGATGATCCTTCTCG 164078 Query 869420 GCCGGGTCCTTGACATAGGTGTCGA 869444 || |||||| | || || |||| Sbjct 164079 CTCGAGTCCTTAATGTAAGTCTCGA 164103 Score = 114 bits (126), Expect = 2e-19 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||||||||||||||| |||| | ||| ||| Sbjct 163530 GCCTTCTGGTACTCGCCTACTCGCTTCTCGAAAAAGTTGGTCTTACCCTGTAACGAAATC 163589 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| || || || | | || || ||| | ||| || | | Sbjct 163590 AGCTCCATCCAATCAAATGGATTAGCCACGTTATACATCTTACCATGTCCCAGAGCACCC 163649 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || || || || |||||||||||||| | |||||| | |||||||||||| Sbjct 163650 AGCAGCCGATCTGCTACGAACTCGATGTACTGACTCATGAGATCCCCGTTCATGCCGACC 163709 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 | ||| || |||| |||| ||||| || ||||||| || ||||| || Sbjct 163710 AACGCGCAAGGGAGCGCGTCGCAAACAAATTCCCTCTCGATATCCACGGCATC 163762 >seq3496 Length=2546822 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| ||||| |||||| ||| || ||||||| || Sbjct 1026136 GCTGCAAACTATCTGAACATCAAGGGGCTGCTGGATCTTACTTGCCAGACTGTGGCTGAC 1026195 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| || ||||| || ||||||||| Sbjct 1026196 ATGATCAAGGGAAAGACTCCAGAGGAGATTCGTAAGACTTTCAACATCAAG 1026246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105681402971188