Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3419 82.4 6e-11 >seq3419 Length=773737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || || |||||||| || | ||| |||| | Sbjct 377557 ATGCAAATCTTTGTGAAAACCCTCACTGGGAAAACCATCACACTGGAAGTGGAGAGTTCT 377498 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| ||||| || || | ||| ||||| Sbjct 377497 GACACAATTGATAATGTTAAAGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGATCAG 377438 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | |||||| |||||||| || |||| ||| || || | || |||||| Sbjct 377437 CAGAGGTTGATATTTGCGGGCAAACAGCTAGAAGATGGCAGGACCTTG-CTGACTACAAC 377379 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 377378 ATTCAGAAGGAGTCTACTCTTCACTTGGTG 377349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412752220309652