Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3345 161 2e-33 >seq3345 Length=549657 Score = 161 bits (178), Expect = 2e-33 Identities = 230/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || || | |||||| ||| ||| || ||||| || |||||||| Sbjct 163845 CCTTCGTCTCGTGAAATGAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCGCGCTTT 163904 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || || || ||||| |||||||| ||||| || ||||| || ||| Sbjct 163905 TTCAGCCAGAAAATCGCGCAGAAGGAACCCGAGAAGAAGATTCCTTCGACACAAGCGAAG 163964 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| ||||||||||| || ||| ||| || |||||| | ||||| Sbjct 163965 GCCACGAGACGCTCGGCAAAGGTCTCCGAGCCGTC------GATCCAGCGTAGAGCCCAA 164018 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || ||| | || | || || | |||||||||||| || ||||||||| Sbjct 164019 TCGGCCTTCTTGGCCACGCAAGGGATGGTCTCAACGGCGCGAAAGAGATGATCCTTCTCG 164078 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || |||||| | ||| || |||| || || ||| |||| |||||||| || ||| Sbjct 164079 CTCGAGTCCTTAATGTAAGTCTCGAGAAGTAGACTGTACATCTCGGAGTGGATATTCTCG 164138 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 || ||||| ||||| ||||| ||| Sbjct 164139 ATTGCGATTTGGAACCCATAGAAG 164162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914356762298396