Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3318 125 5e-24 seq17702 113 3e-20 seq3447 113 3e-20 seq2991 113 3e-20 >seq3318 Length=237370 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| ||||||||||||||||||||| | ||| | | | || Sbjct 46140 AGAACCAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCGAGGGTCCTGCCGTCC 46081 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||||||||| | ||||||||| | || | ||||||||||| Sbjct 46080 TCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 46021 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| || ||| Sbjct 46020 TGGATCTTGGCCTTGACGTTGTCAATTGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTC 45961 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || ||||||||||| Sbjct 45960 TTCCCCGTAAGGGTCTTGACGAAGATCTGCAT 45929 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| ||||||||||||||||||||| | ||| | | | || Sbjct 46368 AGAACCAGATGGAGGGTCGACTCCTTCTGAATGTTATAGTCGGCGAGGGTCCTGCCGTCC 46309 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||||||||| | ||||||||| | || | ||||||||||| Sbjct 46308 TCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 46249 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| || ||| Sbjct 46248 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTC 46189 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 46188 TTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46157 Score = 118 bits (130), Expect = 7e-22 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG---ATAGGCTGCGCTCA 34822 || |||||||||| ||| ||||||||| ||||||||||| | || |||| | Sbjct 46596 AGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAATGTCCTGC---CG 46540 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| |||||||| |||||||||| | ||||||||| | || | |||||||||| Sbjct 46539 TCCTCCAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTG 46480 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || |||||| | || | || || ||| || || | ||| || Sbjct 46479 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCTACCTCGAGGGTGATC 46420 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || ||||||||||| Sbjct 46419 GTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 46385 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||| ||||| || |||| | | | | | || Sbjct 45912 AGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCCAAGGTCCTGCCGTCC 45853 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||||||||||||||| | ||||||||| | || | |||||||| || Sbjct 45852 TCGAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 45793 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || || |||| || |||| ||| || ||| Sbjct 45792 TGGATCTTGGCCTTAACGTTGTCAATTGTGTCGCTGCCCTCAACCTCAAGGGTGATCGTC 45733 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || ||||||||||| Sbjct 45732 TTACCCGTTAGGGTCTTGACGAAGATCTGCAT 45701 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG--ATAGGC-TGCGCTC 34821 |||||| ||||| | |||| ||||||||| |||||||| || | | || | ||| | Sbjct 46825 CAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTCCTGC---C 46769 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| ||||| || ||||||||||| | |||||||| | || | ||| ||||| Sbjct 46768 ATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTT 46709 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || || || | || | ||| || ||| || |||| ||| || Sbjct 46708 ATCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCACTGCTCTCAACCTCAAGGGTGAT 46649 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || ||||||||||| Sbjct 46648 CGTCTTCCCGGTAAGGGTCTTGACGAAGATCTGCAT 46613 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| || || | |||| | || | || || || || |||||||||||| Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || |||||||| | || | ||| || ||||| | || || || ||| Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTG 45544 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || ||| || || | ||| |||||||| || ||||| ||||| || Sbjct 45543 TCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGACG 45484 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 45483 AAGATCTGCAT 45473 >seq17702 Length=19512 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||| ||||| ||||| || || | ||| |||| |||| Sbjct 10764 AGGACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCC 10705 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| || || | |||||||| | || | || || ||||| Sbjct 10704 TCGAGCTGCTTGCCGGCGAATATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC 10645 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| | ||| || |||| || |||||| Sbjct 10644 TGAATCTTCGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTC 10585 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| |||||||||||||| Sbjct 10584 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 10553 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | || ||||| || | ||| ||||||||||| || ||||| | Sbjct 10323 CCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 10264 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| ||||| || ||||||||||| || || ||||| | || Sbjct 10263 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGT 10204 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||| ||||| || | || ||| ||| ||| | || | || |||||| Sbjct 10203 ATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGACC 10144 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||||||||||| || ||||| || || || ||||| ||||| Sbjct 10143 TCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||| ||||| ||||| || || | ||| | || |||| Sbjct 10536 AGGACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCATCC 10477 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || | |||||||| | || | || || ||||| Sbjct 10476 TCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC 10417 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | | ||| | ||| || |||| || |||||| Sbjct 10416 TGAATCTTCGCCTTGACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTC 10357 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| || |||||||||||||||||| Sbjct 10356 TTGCCGGTGAGAGTTTTTACAAAGATCTGCATG 10324 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| |||| || ||||| |||||||| |||| ||| | | |||| Sbjct 11220 AGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCCAGGGTCCTGCCATCC 11161 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||||| ||||| |||||| | || | ||| ||||| || Sbjct 11160 TCCAGCTGCTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTATCC 11101 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | || | ||| | ||| || || | || |||||| Sbjct 11100 TGGATCTTCGCCTTCACATTGTCAATGGTATCAGAGCTCTCTACCTCCAGAGTGATGGTC 11041 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || |||||||| ||||| ||||||||| Sbjct 11040 TTTCCAGTTAGGGTCTTCACAAAAATCTGCATG 11008 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||| ||||||||||| ||||| | || | ||| |||| Sbjct 11448 AGAACCAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCT 11389 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| |||||||||||| | || | || ||||| || Sbjct 11388 TCCAACTGCTTCCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCC 11329 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || |||| | ||| | ||| || || | ||| |||||| Sbjct 11328 TGAATCTTAGCCTTCACATTGTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTC 11269 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| ||||| |||||||| Sbjct 11268 TTGCCTGTCAAGGTCTTCACAAAAATCTGCAT 11237 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || | ||| | ||| ||| ||||| ||||||||||| | | Sbjct 11007 CCACCCCTCAGGCGAAGAACTAAGTGGAGGGTTGACTCTTTCTGTATGTTATAGTCAGCT 10948 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | |||| |||| || || || || ||||| || || || | || || || | || Sbjct 10947 AAGGTGCGACCATCCTCAAGCTGTTTCCCGGCAAAAATGAGCCTCTGTTGATCAGGAGGG 10888 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | ||||| || || |||| | ||| ||| || Sbjct 10887 ATGCCTTCCTTATCCTGGATTTTCGTCTTTACATTGTCTATTGTGTCAGAACTCTCAACC 10828 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || ||||||||||| |||||||||||||| Sbjct 10827 TCCAGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 10781 >seq3447 Length=1078458 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | || || |||||||| | ||| |||||||| ||||||||||||| Sbjct 808029 CCTCCCCTGAGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCG 808088 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || || ||||| || || ||||| ||||| || ||||||||| | || Sbjct 808089 AGCGTGCGGCCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGG 808148 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||| || | || || || || | |||| || | ||| || Sbjct 808149 ATTCCCTCCTTATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACC 808208 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | |||||||||||| || || ||||| || || || |||||||| Sbjct 808209 TCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCAT 808255 >seq2991 Length=32481 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||||| || || || || | || ||||||||| || ||||| || | Sbjct 26343 CCACCTCTCAACCGAAGAACGAGATGCAGTGTTGACTCCTTCTGGATATTATAATCGGCG 26284 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| || || ||||| ||||||||||| || || |||||||| | || Sbjct 26283 AGGGTACGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 26224 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | ||||||||||| | || || || || || | ||||| ||| || ||| Sbjct 26223 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT--TGTCGATGGTATCAGAGGACTC 26168 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | |||||||||||| ||||| | |||||| || ||||||||||| Sbjct 26167 TACCTCTAGGGTTATGGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 26117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325622287915916