Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3419 91.5 1e-13 >seq3419 Length=773737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || || |||||||| || | ||| |||| | Sbjct 377557 ATGCAAATCTTTGTGAAAACCCTCACTGGGAAAACCATCACACTGGAAGTGGAGAGTTCT 377498 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| |||||| || || || || | ||| |||||| Sbjct 377497 GACACAATTGATAATGTTAAAGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGATCAG 377438 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | |||||| |||||||| || || | || || || | ||||||||| Sbjct 377437 CAGAGGTTGATATTTGCGGGCAAACAGCTAGAAGATGGCAGGACCTTG-CTGACTACAAC 377379 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||||||||| | ||| ||||| Sbjct 377378 ATTCAGAAGGAGTCTACTCTTCACTTGGTG 377349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || ||||| ||| | ||| |||| ||| ||| Sbjct 378013 ATGCAAATCTTTGTGAAAACACTTACTGGCAAGACCGTCACCCTCGAGGTTGAGAGCTCT 377954 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || |||||| ||||| || || | || || || Sbjct 377953 -GACACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAGGGAATCCCTCCAGACCA 377895 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| ||| || |||||||| ||||| | | || |||| |||||||| Sbjct 377894 GCAGAGATTGATTTTTGCTGGCAAACAGCTTGAGGATGGCCGCACTCTGGCTGACTACAA 377835 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| ||||||||||| || | ||| |||| Sbjct 377834 CATCCAAAAGGAGTCAACCCTCCACTTGGT 377805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398790443671396