Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3419 179 3e-40 seq3447 113 3e-20 seq17702 109 4e-19 >seq3419 Length=773737 Score = 179 bits (198), Expect = 3e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || |||| ||||| ||||| || || ||||| || ||||| ||| Sbjct 377559 CCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCA 377618 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||||||| ||||||| ||||||||||| || ||| Sbjct 377619 AGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGA 377678 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| || ||| |||| ||||||| | || | ||||||||| ||| || Sbjct 377679 ATACCTTCCTTGTCCTG-AATCTTTGCTTTGACATTGTCAATTGTGTCAGAACTTTCAAC 377737 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || |||||||| || || | |||||| || || |||||||| Sbjct 377738 TTCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCAT 377785 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || ||||| || || || ||||| ||||| || | ||| || | Sbjct 376660 CGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGTCCA 376719 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | ||||| || |||||||| || ||||||||||||||| Sbjct 376720 TCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCAGGAGGAATACCCTCTTTG 376779 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||||| | || | || |||||| || || || ||||| || Sbjct 376780 TCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAACTCTCAACCTCGAGAGTAATG 376839 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || | || || ||||||||||||||| Sbjct 376840 GTTTTTCCTGTCAGCGTCTTCACAAATATCTGCATT 376875 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || ||||| || || || || || ||||| ||||| || || || Sbjct 377787 CCACCCCTCAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCC 377846 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || |||||||||||| | |||||||| ||||| || || || Sbjct 377847 AGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGGG 377906 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || || ||| || | |||||| | || | ||||||||| || || Sbjct 377907 ATTCCCTCCTTATCCTG-AATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAAC 377965 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || |||||||| | ||||| ||||| || ||||| Sbjct 377966 CTCGAGGGTGACGGTCTTGCCAGTAAGTGTTTTCACAAAGATTTGCAT 378013 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || || ||||| ||||||||||| || || || | ||| | Sbjct 381082 ACGAAGGACAAGGTGCAGAGTTGATTCCTTTTGAATGTTGTAGTCTGCCAAGGTCCTCCC 381141 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||| || ||||| || || || || ||||| || Sbjct 381142 ATCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTT 381201 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||| || || | || | ||||||||| ||| || || | ||| || Sbjct 381202 GTCTTGGATTTTTGCCTTTACGTTATCAATGGTGTCAGAACTTTCCACCTCCAAAGTGAT 381261 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || || |||||||| |||||||| Sbjct 381262 AGTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCAT 381297 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || |||||||| ||||| ||||| || || |||| ||| ||| ||| Sbjct 377119 AGTACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGACCATCT 377178 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| || ||| | || | || |||||||| || || || || || || ||| Sbjct 377179 TCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 377238 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||| ||| | || | || |||||| || || || | |||||||| Sbjct 377239 TGGATCTTGGCTTTTACATTGTCAATTGTATCAGAACTCTCGACCTCCAAGGTTATAGTC 377298 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || ||||||||||||||||| Sbjct 377299 TTCCCTGTCAGAGTCTTAACAAATATCTGCAT 377330 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| || ||||||||||| || || || || || |||||||| ||||| || Sbjct 376875 TCCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGC 376934 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| | ||| || | || || |||||| | |||| || || || || || || Sbjct 376935 TAAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGG 376994 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| ||||| || |||||| | || | || || ||| ||| | Sbjct 376995 AATCCCTTCCTTGTCTTG-GATTTTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAA 377053 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || || || || ||||| | || || ||||| |||||||| Sbjct 377054 CTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCAT 377102 >seq3447 Length=1078458 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || || |||| || || |||||||| || || |||||||| ||||| Sbjct 808029 CCTCCCCTGAGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCG 808088 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||||||||| || || | |||| | ||||| || || || Sbjct 808089 AGCGTGCGGCCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGG 808148 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || || || || || || ||| | || | || || || || || Sbjct 808149 ATTCCCTCCTTATCCTG-GATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAAC 808207 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || |||| |||||| || |||||||||||||| Sbjct 808208 CTCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCATTTT 808258 >seq17702 Length=19512 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | ||||| ||||||||||| || |||||||||||||| | ||| | | Sbjct 11223 CGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCCAGGGTCCTGCCA 11164 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | ||||| | ||| || || || || || || || || Sbjct 11163 TCCTCCAGCTGCTTACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTA 11104 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | || ||||| ||||| || ||||| || Sbjct 11103 TCCTGGATCTTCGCCTTCACATTGTCAATGGTATCAGAGCTCTCTACCTCCAGAGTGATG 11044 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||| ||| || ||||| |||||||| Sbjct 11043 GTCTTTCCAGTTAGGGTCTTCACAAAAATCTGCAT 11009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385135800524724