Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq17702 159 3e-34 seq3318 120 3e-22 seq2991 107 2e-18 seq3419 105 6e-18 seq3447 104 2e-17 >seq17702 Length=19512 Score = 159 bits (176), Expect = 3e-34 Identities = 157/200 (79%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||||||||||||||| |||||||| | | || ||| | |||||||||||||||| Sbjct 10522 GGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTACGACCA-TCCTCGAGCTGCTTGC 10464 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| |||||||||||||| ||||| ||||| || Sbjct 10463 CGGCGAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCT 10404 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | | ||| || || | |||| ||| |||||||| |||| Sbjct 10403 TGACGTTATCAACGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAG 10344 Query 133642 TTTTTACGAAAATCTGCATG 133661 ||||||| || ||||||||| Sbjct 10343 TTTTTACAAAGATCTGCATG 10324 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||||||||||||||| |||||||| | | ||| ||| | |||||||||||||||| Sbjct 10750 GGTGGACTCTTTCTGTATGTTGTAATCAGCAAGGGTGCGACCA-TCCTCGAGCTGCTTGC 10692 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| |||||||||||||| ||||| ||||| || Sbjct 10691 CGGCGAATATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGAATCTTCGCCT 10632 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | | ||| || || | |||| ||| |||||||| || | Sbjct 10631 TGACGTTATCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGGG 10572 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 10571 TCTTGACAAAGATCTGCAT 10553 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| |||||||| || | | ||| |||||| |||||||||||| Sbjct 10293 GTGGATTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGTCCGTCCTCCAGCTGCTTGCCC 10234 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||| ||||| ||||| || |||||||| || ||||||| || Sbjct 10233 GCGAAGATCAGACGCTGTTGGTCAGGAGGTATCCCTTCCTTATCTTGGATCTTTGCTTTC 10174 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | ||| || || | || | ||| |||||||| |||||| Sbjct 10173 ACGTTGTCAATAGTGTCTGAACTCTCGACCTCCAGAGTTATGGTCTTGCCGGTGAGAGTT 10114 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 10113 TTCACGAAGATTTGCAT 10097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| |||||||||||||| || || || | | ||| ||| | ||||| || Sbjct 10986 AAGTGGAGGGTTGACTCTTTCTGTATGTTATAGTCAGCTAAGGTGCGACCA-TCCTCAAG 10928 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || ||||||||| ||| || || ||||||||||||||||| || ||| Sbjct 10927 CTGTTTCCCGGCAAAAATGAGCCTCTGTTGATCAGGAGGGATGCCTTCCTTATCCTGGAT 10868 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | || | ||||| | ||| || || | |||| ||| || || Sbjct 10867 TTTCGTCTTTACATTGTCTATTGTGTCAGAACTCTCAACCTCCAGAGTGATGGTCTTACC 10808 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 10807 AGTGAGGGTCTTGACAAAGATCTGCAT 10781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || ||||| || | | || | || || | |||||| || Sbjct 11434 GGTCGACTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCTTCCAACTGCTTCCC 11375 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||| |||||||| || ||||| |||||||| || ||||| ||| Sbjct 11374 TGCAAAGATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGAATCTTAGCCTT 11315 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | |||||| |||| ||| | ||| ||||| |||| || Sbjct 11314 CACATTGTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTGCCTGTCAAGGT 11255 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 11254 CTTCACAAAAATCTGCAT 11237 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCGAGCTGCTT 133519 |||||| |||||||| || || ||||| ||| || || | | ||||| |||||||| Sbjct 11206 GGTGGATTCTTTCTGGATGTTATAATCCGCCAGGGTCCTG--CCA-TCCTCCAGCTGCTT 11150 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 || || | || | || || ||||| || ||||| |||||||| || |||||| Sbjct 11149 ACCTGCAAAGATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTATCCTGGATCTTCGC 11090 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 ||| | | |||| || || | | ||| || || | |||| ||| || || || || Sbjct 11089 CTTCACATTGTCAATGGTATCAGAGCTCTCTACCTCCAGAGTGATGGTCTTTCCAGTTAG 11030 Query 133640 AGTTTTTACGAAAATCTGCATG 133661 || || || |||||||||||| Sbjct 11029 GGTCTTCACAAAAATCTGCATG 11008 >seq3318 Length=237370 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || || || ||| | | || |||||||||||| Sbjct 46132 ATGGAGGGTTGACTCCTTCTGAATGTTATAGTCGGCGAGGGTCCTGCCGTCCTCGAGCTG 46073 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| | || |||| ||||||||| || |||||||| |||||||| |||||| Sbjct 46072 CTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 46013 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | |||| |||||| || ||| || |||| ||||| || || || || Sbjct 46012 GGCCTTGACGTTGTCAATTGTGTCGCTGCTCTCTACCTCGAGGGTGATCGTCTTCCCCGT 45953 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 45952 AAGGGTCTTGACGAAGATCTGCAT 45929 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || || || || || ||||||||| | | || ||| ||| |||||||| || | Sbjct 45669 GTCGATTCCTTTTGGATGTTGTAATCGGCTAGGGT--ACGGCCGTCTTCGAGCTGTTTTC 45612 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || ||||| ||||| ||||| |||||| || Sbjct 45611 CGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTTAGCCT 45552 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| || |||||| || | ||||| ||| |||||||| || | Sbjct 45551 TAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTG 45492 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 45491 TCTTGACGAAGATCTGCAT 45473 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| || || ||||| || |||||||| ||| || |||||||||| Sbjct 45906 AAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCCAAGGTCCTGCCGTCCTCGAGC 45847 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || |||| ||||||||| || |||||||| ||||| || |||| Sbjct 45846 TGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATC 45787 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| |||||| || ||| || || | ||||| || || || Sbjct 45786 TTGGCCTTAACGTTGTCAATTGTGTCGCTGCCCTCAACCTCAAGGGTGATCGTCTTACCC 45727 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 45726 GTTAGGGTCTTGACGAAGATCTGCAT 45701 >seq2991 Length=32481 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| ||||| |||||| | | || ||| | ||||| |||||||| || Sbjct 26313 GTTGACTCCTTCTGGATATTATAATCGGCGAGGGTACGACCA-TCCTCAAGCTGCTTACC 26255 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 26254 GGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 26195 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | || ||| || || | ||| | ||| || || |||| || Sbjct 26194 CACATTGTCGATGGTATCAGAGGACTCTACCTCTAGGGTTATGGTCTTACCCGTCAAGGT 26135 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 26134 CTTGACGAAGATCTGCAT 26117 >seq3419 Length=773737 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| ||||||||||| | | ||| ||| | || || ||||| |||| Sbjct 377588 GGTGGACTCCTTCTGAATATTGTAATCTGCAAGAGTGCGACCA-TCTTCAAGCTGTTTGC 377646 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||| || || || || ||||||||||| |||||| | Sbjct 377647 CAGCAAATATCAACCTTTGCTGATCTGGTGGAATACCTTCCTTGTCCTGAATCTTTGCTT 377706 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | || || || | |||| ||||| |||||||| | Sbjct 377707 TGACATTGTCAATTGTGTCAGAACTTTCAACTTCCAATGTGATAGTTTTACCGGTCAGGG 377766 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| ||||||||||||||| Sbjct 377767 TTTTCACGAAAATCTGCATG 377786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||| ||||| || |||||||| | | || | ||||| | | Sbjct 376897 AAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCTAAGGTCCTCCCATCCTCCAAC 376956 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || |||| |||| ||| ||||| || || || ||||||||||| ||| Sbjct 376957 TGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGAATCCCTTCCTTGTCTTGGATT 377016 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| || || | || || || | ||||| || || || Sbjct 377017 TTAGTCTTGACATTGTCAATGGTATCTGAACTTTCAACTTCCAAGGTGATTGTCTTCCCA 377076 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || ||||||||||| Sbjct 377077 GTAAGAGTCTTCACAAAAATCTGCAT 377102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || | || | || |||||||||||| ||||| || |||||| Sbjct 381143 TCCTCTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTG 381202 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| ||| ||| | | |||| ||||| | ||||| || | |||| Sbjct 381203 TCTTGGATTTTTGCCTTTACGTTATCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATA 381262 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || |||| ||| || || |||||||||||| Sbjct 381263 GTCTTTCCTGTCAAAGTCTTAACAAAAATCTGCATG 381298 >seq3447 Length=1078458 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || || || || | | |||| ||||||||| || || || Sbjct 808059 GTGGATTCCTTCTGGATGTTATAGTCCGCGAGCGTGCGGCCGTCCTCGAGTTGTTTCCCT 808118 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| |||||||||||||| || ||||| || ||||| || |||||| ||| Sbjct 808119 GCGAAAATCAGCCGCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTCGTCTTC 808178 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||| || | | ||| || || | ||| | ||| || ||||| || ||| Sbjct 808179 ACATTGTCGATCGTATCCGATGACTCAACCTCTAGGGTTATGGTCTTCCCGGTTAGGGTT 808238 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 808239 TTCACGAATATCTGCAT 808255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483313456411360