Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3510 102 2e-16 >seq3510 Length=3337861 Score = 102 bits (112), Expect = 2e-16 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||| |||||||| ||||| ||||| ||||| | |||||| || |||||||||| Sbjct 2305521 GACACTTGAATGATGGTGATTTTGTTCTTTTCAACCGTCAACCAAGTCTACATAAAATGT 2305580 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 |||| |||| ||||| |||| ||||| || | || || || || ||| || Sbjct 2305581 CTATCATGGGGCATAAGATCAAG--ATTATGCCTTATTCCACTTTCCGCTTGAATTTATC 2305638 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 | | | || || ||||| || |||||||| |||||||||||||||||||| || || Sbjct 2305639 AGTTACGTCCCCATACAATGCTGACTTTGATGGTGATGAAATGAATATGCATGTTCCACA 2305698 Query 305485 ATCA 305488 |||| Sbjct 2305699 ATCA 2305702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186542679923204