Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3318 96.9 2e-15 seq17702 84.2 1e-11 seq3419 84.2 1e-11 >seq3318 Length=237370 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| ||||||||||||| || || || |||| || | ||||||||||| || Sbjct 45663 TCCTTTTGGATGTTGTAATCGGCTAGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAG 45604 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| ||||||||| || | || | ||||||||||| || || | | ||| | Sbjct 45603 ATCAGACGCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTT-AGCCTTAACGTT 45545 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||||| ||||| || | ||||| || || || || | || || || Sbjct 45544 GTCGATGGTGTCGCTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGAC 45485 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 45484 GAAGATCTGCAT 45473 >seq17702 Length=19512 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | || | || | || || ||| |||||| |||||||||||||| | Sbjct 10552 ACCACCTCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGC 10493 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || ||||| || || | | |||||| || | || Sbjct 10492 AAGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGAGG 10433 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| ||| || | || |||||||| ||| || Sbjct 10432 GATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTTATCAACGGTGTCAGAGCT---CTC 10376 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | |||||||||||||||||||| Sbjct 10375 AACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 10325 >seq3419 Length=773737 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| || | ||||||||| ||||| ||| || || ||||||||||| | Sbjct 376876 CCACCACGCAATCGAAGCACCAAATGGAGAGTTGACTCCTTCTGAATGTTGTAATCAGCT 376935 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | || ||||| || || || |||||||||| | ||| || ||| | || Sbjct 376936 AAGGTCCTCCCATCCTCCAACTGCTTACCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGA 376995 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||||| ||||| ||||| || | |||| ||| | ||| || ||| ||| Sbjct 376996 ATCCCTTCCTTGTCTTGGATTTT-AGTCTTGACATTGTCAATGGTATC---TGAACTTTC 377051 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || || || || | || || ||||| ||||||||| Sbjct 377052 AACTTCCAAGGTGATTGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCATA 377103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328632835994880