Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17702 129 1e-24 seq3419 129 1e-24 seq3318 120 7e-22 >seq17702 Length=19512 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || |||||| | || || || || |||||| Sbjct 10328 CAGATCTTTGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCTGAC 10387 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || || || || ||| |||||||| || |||||||| || || ||| || Sbjct 10388 ACCGTTGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAGCAG 10447 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||||||||| |||||| | || ||||| | || | || ||||||||| | Sbjct 10448 AGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTTGCTGATTACAACATA 10507 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || |||||||| Sbjct 10508 CAGAAAGAGTCCACCCTCCACCTTGT 10533 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || |||||| | || || || || |||||| Sbjct 10556 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGAGCTCTGAC 10615 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || |||||||| || || ||| || Sbjct 10616 ACCATTGATAACGTCAAGGCGAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAGCAG 10675 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || ||||| |||||||| |||||| | || ||||| | || | || ||||||||| | Sbjct 10676 AGGCTTATATTCGCCGGCAAGCAGCTCGAGGATGGTCGCACCCTTGCTGATTACAACATA 10735 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || |||||||| Sbjct 10736 CAGAAAGAGTCCACCCTCCACCTTGT 10761 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| || || || || | || ||||| || |||||| Sbjct 11240 CAGATTTTTGTGAAGACCTTGACAGGCAAGACCATTACCCTCGAGGTGGAGAGCTCTGAC 11299 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || ||||| || || ||| ||| Sbjct 11300 ACCATAGACAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATCCCACCAGACCAGCAA 11359 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || ||||||||||||||||| | || | || || |||||| | Sbjct 11360 CGGTTGATCTTTGCAGGGAAGCAGTTGGAAGATGGGCGAACACTTGCTGACTACAACATT 11419 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || ||||| ||| | | ||||| Sbjct 11420 CAGAAAGAGTCGACCCTCCACCTGGTTCTTCGTCTTCG 11457 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || |||||| |||| || || ||||||||| Sbjct 10784 CAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACTCTGGAGGTTGAGAGTTCTGAC 10843 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| || || || || || ||||| || || || || Sbjct 10844 ACAATAGACAATGTAAAGACGAAAATCCAGGATAAGGAAGGCATCCCTCCTGATCAACAG 10903 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || ||||| || ||| | || ||||| | || || || || || ||| | Sbjct 10904 AGGCTCATTTTTGCCGGGAAACAGCTTGAGGATGGTCGCACCTTAGCTGACTATAACATA 10963 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| || || ||| | ||| Sbjct 10964 CAGAAAGAGTCAACCCTCCACTTAGTT 10990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || |||||||| || || |||||||||| ||||| || |||| ||||| ||||| ||| Sbjct 11217 ACGAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCCGCCAGGGTCCTGCCATCCTCC 11158 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || || ||||| | |||||||| Sbjct 11157 AGCTGCTTACCTGCAAAGATCAAACGTTGTTG 11126 >seq3419 Length=773737 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || ||||||||||| ||||||||||||||| Sbjct 381294 CAGATTTTTGTTAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTGGAAAGTTCTGAC 381235 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||| || ||||| || || ||||| || ||| || Sbjct 381234 ACCATTGATAACGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCACCCGACCAGCAG 381175 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || |||||| | || ||||| ||||| ||||| || |||||| | Sbjct 381174 AGGTTGATCTTTGCTGGGAAGCAGCTAGAGGATGGGAGGACCTTGGCAGACTACAACATT 381115 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || ||||| |||||||| Sbjct 381114 CAAAAGGAATCAACTCTGCACCTTGT 381089 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||||| ||||||||||| || ||| | || || || |||||||| Sbjct 376871 CAGATATTTGTGAAGACGCTGACAGGAAAAACCATTACTCTCGAGGTTGAGAGTTCTGAT 376812 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| ||||| ||||| ||||| || ||| || || || Sbjct 376811 ACAATTGATAATGTCAAAGC-TAAGATCCAAGACAAAGAGGGTATTCCTCCTGATCAGCA 376753 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || || |||||| |||| |||||| | || |||| ||||||||| | Sbjct 376752 GAGGTTGATCTTTGCAGGTAAGCAGCTGGAGGATGGACGTACCCTGGCAGATTACAACAT 376693 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||| || || || ||||| | ||||||| Sbjct 376692 CCAGAAGGAGTCCACCCTGCATCTTGTCCTCCGACTTCG 376654 Score = 122 bits (134), Expect = 2e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| |||||||| ||||||||||||||| | || Sbjct 377770 AAAACCCTGACCGGTAAAACTATCACATTGGAAGTTGAAAGTTCTGACACAATTGACAAT 377711 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||||||||| || || ||||| ||| || || ||||| | || || Sbjct 377710 GTCAAAGC-AAAGATTCAGGACAAGGAAGGTATTCCACCAGATCAGCAAAGGTTGATATT 377652 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || ||| | |||||||| | ||| | || |||||||| | ||||| ||||| Sbjct 377651 TGCTGGCAAACAGCTTGAAGATGGTCGCACTCTTGCAGATTACAATATTCAGAAGGAGTC 377592 Query 206364 TACTCTTCACCTTGTT 206379 || |||||||| ||| Sbjct 377591 CACCCTTCACCTGGTT 377576 Score = 116 bits (128), Expect = 9e-21 Identities = 142/190 (75%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| ||||| || ||||| ||||| |||||||||| |||||||||||| | || | Sbjct 377542 AAAACCCTCACTGGGAAAACCATCACACTGGAAGTGGAGAGTTCTGACACAATTGATAAT 377483 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| |||||||| || || || ||||| || || || || | || || Sbjct 377482 GTTAAAGC-CAAGATTCAGGACAAGGAGGGAATCCCCCCTGATCAGCAGAGGTTGATATT 377424 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || ||| | |||||||| ||||| || || || |||||| | ||||| ||||| Sbjct 377423 TGCGGGCAAACAGCTAGAAGATGGCAGGACCTT-GCTGACTACAACATTCAGAAGGAGTC 377365 Query 206364 TACTCTTCAC 206373 |||||||||| Sbjct 377364 TACTCTTCAC 377355 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || || ||||||||| | ||||||||||| || | || Sbjct 381738 AAGACTCTCACTGGAAAGACCATTACTTTGGAATTTGAAAGTTCTGATACCATTGATAAT 381679 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || || ||||| |||||| ||||| | || || Sbjct 381678 GTTAAGGCCAAAATTCAAGACAAGGAGGGAATCCCACCGGACCAACAAAGGTTAATATTT 381619 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | ||||||||||| ||| | || || |||||| ||||||||||||| Sbjct 381618 GCTGGTAAGCAACTTGAAGATGGAAGAACTCTTGCTGACTACAACATCCAGAAAGAGTCA 381559 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 381558 ACCCTACAC 381550 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||||||| |||||||| || Sbjct 377099 CAGATTTTTGTGAAGACTCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGTTCAGAT 377040 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||| ||| || ||| || Sbjct 377039 ACCATTGACAATGTCAAGACTAAAATCCAAGACAAGGAAGGGATTCCACCAGACCAACAG 376980 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || || || || || ||||||||||| ||||| ||||| || || ||||||||| | Sbjct 376979 AGGCTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGAGGACCTTAGCTGATTACAACATT 376920 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| ||||| || Sbjct 376919 CAGAAGGAGTCAACTCTCCA 376900 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| |||||||||||||| || |||||||| || | || Sbjct 381510 AAGACTCTTACTGGGAAAACCATCACTTTGGAAGTTGAGAGTTCTGATACTATTGACAAT 381451 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| || || || || || || || || ||| ||||| || || || Sbjct 381450 GTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAACAAAGGCTCATATTT 381391 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || |||||||| || | || || || || |||| || || ||| Sbjct 381390 GCTGGTAAGCAGCTTGAGGATGGAAGAACCCTTGCAGACTATAATATCCAAAAGGAATCT 381331 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 381330 ACACTCCAC 381322 >seq3318 Length=237370 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| | || || || || |||| Sbjct 46616 CAGATCTTCGTCAAGACCCTTACCGGGAAGACGATCACCCTTGAGGTTGAGAGCAGTGAC 46675 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| || |||||| || Sbjct 46676 ACCATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGGATCCCACCGGACCAGCAG 46735 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||| || |||||| |||||||||| ||||||||||| ||||| ||| || Sbjct 46736 AGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGCAGGACTTTGGCTGATTATAACATC 46795 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 46796 CAGAAGGAGTCCACCCTGCACCTTGT 46821 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| ||||| ||||| || ||| Sbjct 45476 CAGATCTTCGTCAAGACACTCACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGCGAC 45535 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || |||||||| || |||||| || Sbjct 45536 ACCATCGACAACGTTAAGGCTAAGATCCAGGACAAAGAAGGGATCCCACCGGACCAGCAG 45595 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||| ||| | ||||| || | || | |||||||||||| || Sbjct 45596 CGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCCTAGCCGATTACAACATC 45655 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || || || ||||| ||||||||| Sbjct 45656 CAAAAGGAATCGACTCTCCACCTTGTT 45682 Score = 104 bits (114), Expect = 6e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || || ||||| ||||||| ||||| |||||||||||||| ||||||||| Sbjct 46821 ACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTCCTGCCATCTTCC 46762 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || |||||||| |||| Sbjct 46761 AGCTGCTTCCCAGCGAAGATCAGCC 46737 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| |||||||| || ||||| ||||||| |||||||||||||| ||| Sbjct 46605 CGAAGACGAAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCAGCCAATGTC 46546 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 || || || |||||||||||||| |||||||| Sbjct 46545 CTGCCGTCCTCCAGCTGCTTTCCAGCGAAGAT 46514 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| | || || || | ||| Sbjct 45704 CAGATCTTCGTCAAGACCCTAACGGGTAAGACGATCACCCTTGAGGTTGAGGGCAGCGAC 45763 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| || || || || || || || ||| || Sbjct 45764 ACAATTGACAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAGCAG 45823 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||||||||||||| | || || || ||||| ||||| ||||||||| || Sbjct 45824 AGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGGACCTTGGCGGATTACAACATC 45883 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| || || || || ||| Sbjct 45884 CAGAAGGAATCGACCCTCCAC 45904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181551816108644