Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3419 84.2 2e-11 >seq3419 Length=773737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | ||||| ||| | ||||| | ||||| ||| Sbjct 377786 CATGCAGATTTTCGTGAAAACCCTGACCGGTAAAACTATCACATTGGAAGTTGAAAGTTC 377727 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| ||| ||| || || || ||||| || || ||||| Sbjct 377726 TGACACAATTGACAATGTCAAAGCAAAGATTCAGGACAAGGAAGGTATTCCACCAGATCA 377667 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | || | | |||||||| || ||||||| | | | | | |||||||| Sbjct 377666 GCAAAGGTTGATATTTGCTGGCAAACAGCTTGAAGATGGTCGCACTCTTGCAGATTACAA 377607 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 |||||| || || |||||| |||| Sbjct 377606 TATTCAGAAGGAGTCCACCCTTCA 377583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444995566788480