Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3345 248 1e-59 >seq3345 Length=549657 Score = 248 bits (274), Expect = 1e-59 Identities = 362/506 (72%), Gaps = 13/506 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||||||||||| || ||||| ||||| || || ||||| ||||||||||| |||| Sbjct 164378 GATCTGGGAAATGTAC-AAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGGTTGACC 164320 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | || | | |||||| | | | | ||||||||| ||||| ||||||| Sbjct 164319 TCTCCCAGGATATCCGCGACTGGGAGAATACCTTAAACGACGACGAACGCCACTTCATCA 164260 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| || ||||| ||||||| |||||| || || ||||| || || Sbjct 164259 CTCACGTCCTTGCATTTTT-CGCCGCCTCCGATGGAATTGTACTTGAGAATCTCGCTTCT 164201 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || ||| || || || || | ||||| ||| || || |||||||| ||||| Sbjct 164200 CGTTTCATGTCTGATGTTCAGGTGGCTGAGGCTCGTGCCTTCTATGGGTTCCAAATCGCA 164141 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| || |||||||| || | ||| || || |||| || ||| | |||||| || Sbjct 164140 ATCGAGAATATCCACTCCGAGATGTACAGTCTACTTCTCGAGACTTACATTAAGGACTCG 164081 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 ||||||||| || |||||||||||| | || || | || | ||| || |||||| Sbjct 164080 AGCGAGAAGGATCATCTCTTTCGCGCCGTTGAGACCATCCCTTGCGTGGCCAAGAAGGCC 164021 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCGGCTCGTC 1456190 || ||||| | |||||| || ||| || | |||||||||||| ||||| Sbjct 164020 GATTGGGCTCTACGCTGGATC------GACGGCTCGGAGACCTTTGCCGAGCGTCTCGTG 163967 Query 1456191 GGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||| || | ||||| || ||||| |||||||| |||||||| || || ||||| Sbjct 163966 GCCTTCGCTTGTGTCGAAGGAATCTTCTTCTCGGGTTCCTTCTGCGCGATTTTCTGGCTG 163907 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||| || ||||| ||||| Sbjct 163906 AAAAAGCGCGGTCTGATGCCTGGTCT 163881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176097829549768