Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq17702 140 3e-28 seq3419 140 3e-28 seq3447 129 6e-25 seq3318 109 6e-19 >seq17702 Length=19512 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || | ||| | || || || || ||||||||||| ||||| |||||||| || Sbjct 10323 CCACCCCTCAATCGAAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 10264 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| || || |||| |||||| || || || ||| Sbjct 10263 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGGTCAGGAGGT 10204 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||| ||| || ||| | ||||| || || || Sbjct 10203 ATCCCTTCCTTATCTTGGATCTTTGCTTTCACGTTGTCAATAGTGTCTGAACTCTCGACC 10144 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | |||||| ||||| |||||||| Sbjct 10143 TCCAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 10097 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||| || || Sbjct 10551 CCACCTCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCA 10492 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || |||||||| ||||| || || || | | |||||| || || || Sbjct 10491 AGGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGAGGG 10432 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | ||||| || || || Sbjct 10431 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTTATCAACGGTGTCAGAGCTCTCAACC 10372 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | |||||| || || || ||||| Sbjct 10371 TCAAGAGTGATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 10325 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||| || || Sbjct 10779 CCACCTCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGTATGTTGTAATCAGCA 10720 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || |||||||| ||||| || || || | | |||||| || || || Sbjct 10719 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAATATAAGCCTCTGCTGGTCAGGAGGG 10660 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||| || ||||| || | ||||| || || || Sbjct 10659 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACGTTATCAATGGTGTCAGAGCTCTCAACC 10600 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | || || || || || ||||| Sbjct 10599 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 10553 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || || || |||||||||||||| ||| || | || || Sbjct 11445 ACCAGGTGGAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCAAGTGTTCGCCCATCTTCC 11386 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||| || |||||||| ||||| || ||||| || || || || ||||| || || ||| Sbjct 11385 AACTGCTTCCCTGCAAAGATCAACCGTTGCTGGTCTGGTGGGATACCTTCCTTATCCTGA 11326 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| || ||||| ||||| |||||||| || Sbjct 11325 ATCTTAGCCTTCACATTGTCTATGGTGTCAGAGCTCTCCACCTCGAGGGTAATGGTCTTG 11266 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| ||||| Sbjct 11265 CCTGTCAAGGTCTTCACAAAAATCTGCAT 11237 >seq3419 Length=773737 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 377559 CCACCCCTAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCTGCA 377618 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||||||||| ||||| ||||| | |||||||| || || Sbjct 377619 AGAGTGCGACCATCTTCAAGCTGTTTGCCAGCAAATATCAACCTTTGCTGATCTGGTGGA 377678 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || ||||| ||| |||||| ||| | |||||| || ||| || Sbjct 377679 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACATTGTCAATTGTGTCAGAACTTTCAACT 377738 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || ||||||||||| | ||||| |||||||| ||||| Sbjct 377739 TCCAATGTGATAGTTTTACCGGTCAGGGTTTTCACGAAAATCTGCAT 377785 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| || || ||||||||||||||||||||||| ||||| ||| || || Sbjct 381089 ACAAGGTGCAGAGTTGATTCCTTTTGAATGTTGTAGTCTGCCAA-GGTCCTCCCATCCTC 381147 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||||| || || ||||| ||||| | |||||| ||||| || || || || || ||||| Sbjct 381148 TAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTG 381207 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 |||||| || || || | ||||| || |||||| || | ||| || || || Sbjct 381208 GATTTTTGCCTTTACGTTATCAATGGTGTCAGAACTTTCCACCTCCAAAGTGATAGTCTT 381267 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| ||||| ||||| ||||| Sbjct 381268 TCCTGTCAAAGTCTTAACAAAAATCTGCAT 381297 Score = 114 bits (126), Expect = 1e-20 Identities = 157/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| |||||||||||||| ||| | || Sbjct 377341 AGGCGAAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGTCCTGC 377400 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 | || || ||||||||||| ||||| ||||| | ||||||||| || || || || || Sbjct 377401 CA-TCTTCTAGCTGTTTGCCCGCAAATATCAACCTCTGCTGATCAGGGGGGATTCCCTCC 377459 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || ||| || || | |||||| || ||||| || || || Sbjct 377460 TTGTCCTGAATCTTGGCTTTAACATTATCAATTGTGTCAGAACTCTCCACTTCCAGTGTG 377519 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | ||||| || || |||||||| Sbjct 377520 ATGGTTTTCCCAGTGAGGGTTTTCACAAAGATTTGCAT 377557 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | || || || || ||||| ||||| || |||||||| || | | ||| | Sbjct 376657 AGTCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTACGT 376716 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || |||||||| ||||| | ||||||||| || || || || ||| Sbjct 376717 CCATCCTCCAGCTGCTTACCTGCAAAGATCAACCTCTGCTGATCAGGAGGAATACCCTCT 376776 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || |||||| || | ||| || || || || ||||||||| Sbjct 376777 TTGTCTTGGATCTTAGCTTTGACATTATCAATTGTATCAGAACTCTCAACCTCGAGAGTA 376836 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||||||| || || | || || || || || |||||| Sbjct 376837 ATGGTTTTTCCTGTCAGCGTCTTCACAAATATCTGCATT 376875 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | |||| | || | ||| || |||||||||||||| ||||||||||| || Sbjct 377104 CCTCCCCGAAGTCTAAGTACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 377163 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || |||||||| |||||||| || | | ||||||||| || || Sbjct 377164 AGGGTACGACCATCTTCAAGCTGTTTTCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGG 377223 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||| || ||| | ||| || || || || Sbjct 377224 ATTCCTTCCTTATCTTGGATCTTGGCTTTTACATTGTCAATTGTATCAGAACTCTCGACC 377283 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || || || || | ||| ||||| || || ||||| Sbjct 377284 TCCAAGGTTATAGTCTTCCCTGTCAGAGTCTTAACAAATATCTGCAT 377330 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || | ||| || || || |||||||| ||||||||||| | Sbjct 377787 CCACCCCTCAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCC 377846 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||||||||| | |||||| || || || Sbjct 377847 AGAGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGAGGG 377906 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| || | ||||| || || || Sbjct 377907 ATTCCCTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAACC 377966 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || | ||| || || || | ||||| || || |||||||| Sbjct 377967 TCGAGGGTGACGGTCTTGCCAGTAAGTGTTTTCACAAAGATTTGCAT 378013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || ||||||||||| || || ||||| ||| ||| Sbjct 381308 AGACGGAGCACCAAGTGGAGTGTAGATTCCTTTTGGATATTATAGTCTGCAAGGGTTCTT 381367 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || ||||| || | | || || || || || || || || Sbjct 381368 CCATCCTCAAGCTGCTTACCAGCAAATATGAGCCTTTGTTGGTCTGGTGGGATACCCTCC 381427 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || |||||| ||||| ||| | || || || || || || | ||| Sbjct 381428 TTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTATCAGAACTCTCAACTTCCAAAGTG 381487 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | ||| ||||||||||||||||| Sbjct 381488 ATGGTTTTCCCAGTAAGAGTCTTAACGAAAATTTGCAT 381525 >seq3447 Length=1078458 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| || | || ||||| || ||||||||||| || ||||| ||||| | Sbjct 808029 CCTCCCCTGAGCCGAAGAACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCCGCG 808088 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| ||||| ||||| ||||| ||||||| |||||||| || || || Sbjct 808089 AGCGTGCGGCCGTCCTCGAGTTGTTTCCCTGCGAAAATCAGCCGCTGCTGGTCTGGTGGG 808148 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || ||| | || || || || || || Sbjct 808149 ATTCCCTCCTTATCCTGGATCTTCGTCTTCACATTGTCGATCGTATCCGATGACTCAACC 808208 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||||| ||||| ||||| || ||||||||| Sbjct 808209 TCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTCACGAATATCTGCATTTTG 808259 >seq3318 Length=237370 Score = 109 bits (120), Expect = 6e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || ||||||||||| |||||||| ||| | Sbjct 45699 CCACCACGGAGGCGGAGAACAAGGTGGAGAGTCGATTCCTTTTGGATGTTGTAATCGGCT 45640 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| ||||||||||| || || || |||| ||||||||| || || || Sbjct 45639 AGGGTACGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 45580 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| || || || || || || ||| | |||||| ||||| Sbjct 45579 ATCCCTTCTTTGTCCTGGATCTTAGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACC 45520 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || | || ||||| || ||||| | || || ||||| || |||| | |||||| Sbjct 45519 TCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCA-TCTGTTTT 45466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505286176285280