Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3444 127 3e-24 >seq3444 Length=1312069 Score = 127 bits (140), Expect = 3e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 1026244 TCCTCCTTGATCAACATAACGTGCAGTATCATTGAATACCCGCAGCATTGGAACAATACC 1026303 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| |||||||||| ||| |||||| || ||| |||| || || || || || Sbjct 1026304 ATTAGAAGTACCATTTGTCCCACGAATATAGCTCCCTGTTGCACGGATGTTGTGAACTGA 1026363 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 1026364 GACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 1026423 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||||||| ||||| Sbjct 1026424 GCCCTCAATGCTATCATCTTTCATG 1026448 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| || |||||||||||| || ||| | || || | Sbjct 1026619 GTGCCAGCATTGAACAGGGTAGGAGAAGCATGAGTGAACCATCGTTGAGACATCATATGG 1026678 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| |||| | ||||| ||||| || |||||||| | ||||| | ||||| | Sbjct 1026679 TACGTTTTAATAACAGATTCAATATCATTCTTGTGAATTCCAACAGCGACTCTCATCAGC 1026738 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || ||||| || | ||| || || | | || || ||||| || | || || Sbjct 1026739 ATGTGCTGTGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1026798 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || |||||||| Sbjct 1026799 GTTTTGAATCCAAAATA 1026815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 || |||| |||||| | ||||||||||||||||| || |||||||| | |||||| Sbjct 1024866 ATGAATGTATCTGCAAGACCCTGAACCCCAATACCAATGGGTCTATGCCGAAAATTTGAT 1024925 Query 69145 CTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||| || | | || || |||||||||| ||| || || ||||||||||| Sbjct 1024926 CTTTTTGCATTTTCAACGGGGTAATAATTAACATCAATTATCTTATTAAGATT 1024978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686756271900960