Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq4503 1855 0.0 seq4995 697 0.0 >seq4503 Length=1033 Score = 1855 bits (2056), Expect = 0.0 Identities = 1031/1033 (99%), Gaps = 0/1033 (0%) Strand=Plus/Plus Query 30141 AGCTCAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 30200 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCTTAGGTGAGAACATCCCTGCCTGAACATGAGAAAAAACAGGGTACTCATACTCACTT 60 Query 30201 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 30260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTAAGTGACGGCTGCATACTAACCGCTTCATACATCTCGTAGATTTCTCTGGCGATTGAA 120 Query 30261 GGGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGCAAGCAATGCGGCGTTATAAGCA 30320 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 GGGCTAAATTCTTCAACGCTAACTTTGAGAATTTTTGTAAGCAATGCGGCGTTATAAGCA 180 Query 30321 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTG 30380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTAATGCATTGATGCCATTAAATAAAGCACCAACGCCTGACTGCCCCATCCCCATCTTG 240 Query 30381 TCTGCGACAGATTCCTGGGATAAGCCAAGTTCAtttttctttttttCATAAATTGCTTTA 30440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCTGCGACAGATTCCTGGGATAAGCCAAGTTCATTTTTCTTTTTTTCATAAATTGCTTTA 300 Query 30441 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGT 30500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGGCGACGTGCGTCCTCAAGCTGCTCTTGTGTTAATGGTTTCTTTTTTGTGCTCATACGT 360 Query 30501 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 30560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAAATCTATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCT 420 Query 30561 GGCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 30620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGCGGTGATAATGGTTGCATGTACTAAGGAGGTTGTATGGAACAACGCATAACCCTGAAA 480 Query 30621 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGC 30680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GATTATGCAATGCGCTTTGGGCAAACCAAGACAGCTAAAGATCTCGGCGTATATCAAAGC 540 Query 30681 GCGATCAACAAGGCCATTCATGCAGGCCGAAAGAtttttttAACTATAAACGCTGATGGA 30740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCGATCAACAAGGCCATTCATGCAGGCCGAAAGATTTTTTTAACTATAAACGCTGATGGA 600 Query 30741 AGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACaaaaaaaCAACAGCATAAATA 30800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 AGCGTTTATGCGGAAGAGGTAAAGCCCTTCCCGAGTAACAAAAAAACAACAGCATAAATA 660 Query 30801 ACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGT 30860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACCCCGCTCTTACACATTCCAGCCCTGAAAAAGGGCATCAAATTAAACCACACCTATGGT 720 Query 30861 GTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATGGT 30920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GTATGCATTTATTTGCATACATTCAATCAATTGTTATCTAAGGAAATACTTACATATGGT 780 Query 30921 TCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTTAACAAAATCGC 30980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TCGTGCAAACAAACGCAACGAGGCTCTACGAATCGAGAGTGCGTTGCTTAACAAAATCGC 840 Query 30981 AATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCGCAGATCAGCAG 31040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AATGCTTGGAACTGAGAAGACAGCGGAAGCTGTGGGCGTTGATAAGTCGCAGATCAGCAG 900 Query 31041 GTGGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTTGAATGGGGGGT 31100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GTGGAAGAGGGACTGGATTCCAAAGTTCTCAATGCTGCTTGCTGTTCTTGAATGGGGGGT 960 Query 31101 CGTTGACGACGACATGGCTCGATTGGCGCGACAAGTTGCTGCGATTCTCACCAATAAAAA 31160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CGTTGACGACGACATGGCTCGATTGGCGCGACAAGTTGCTGCGATTCTCACCAATAAAAA 1020 Query 31161 ACGCCCGGCGGCA 31173 ||||||||||||| Sbjct 1021 ACGCCCGGCGGCA 1033 >seq4995 Length=1147 Score = 697 bits (772), Expect = 0.0 Identities = 419/441 (95%), Gaps = 0/441 (0%) Strand=Plus/Minus Query 23002 TAAGTTCGATCTCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACAGCCAGGCGTC 23061 ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 441 TAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTC 382 Query 23062 TTCGCTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATACAGTCTGGTAGT 23121 |||| ||||||||||||||||||||||||||||||||||| || |||| || ||||| || Sbjct 381 TTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGT 322 Query 23122 TCAGACGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCGATTTCTGATGCTGAAT 23181 |||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 321 TCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAAT 262 Query 23182 CAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGA 23241 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 261 CAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGA 202 Query 23242 ATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCG 23301 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 201 ATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCATCG 142 Query 23302 TTCCTTAAAGACGCCGTTTAACATACCGATTGCCAGACTTAAGTGAGTCGGTGTGAATCC 23361 |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 141 TTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTCGGTGTGAATCC 82 Query 23362 CATCAGCGTTACCGTTTCGCGGTGCTTCTTTAGTACGCTACGGCAAATGTCATTGACGTT 23421 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 81 CATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTT 22 Query 23422 TTTATCCGGAAACTGCTGTCT 23442 ||||||||||||||||||||| Sbjct 21 TTTATCCGGAAACTGCTGTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122697311847768